Effects of Microbial-Mineral Interactions on Organic Carbon Stabilization in a Ponderosa Pine Root Zone: A Micro-Scale Approach

Dohnalkova, Alice C.; Tfaily, Malak M.; Chu, Rosalie K.; Smith, A. Peyton; Brislawn, Colin J.; Varga, Tamas; Crump, Alex R.; Kovarik, Libor; Thomashow, Linda S.; Harsh, James B.; Keller, Chester Kent; Balogh-Brunstad, Zsuzsanna

doi:10.3389/feart.2022.799694

Effects of Microbial-Mineral Interactions on Organic Carbon Stabilization in a Ponderosa Pine Root Zone: A Micro-Scale Approach

Journal Article · Tue May 24 00:00:00 EDT 2022 · Frontiers in Earth Science

DOI:https://doi.org/10.3389/feart.2022.799694· OSTI ID:1884575

Dohnalkova, Alice C. ^[1]; ^[2]; Chu, Rosalie K. ^[1]; Smith, A. Peyton ^[3]; ^[1]; ^[1]; Crump, Alex R. ^[4]; Kovarik, Libor ^[1]; Thomashow, Linda S. ^[5]; ^[5]; Keller, Chester Kent ^[5]; Balogh-Brunstad, Zsuzsanna ^[6]

Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Univ. of Arizona, Tucson, AZ (United States)
Texas A & M Univ., College Station, TX (United States)
Univ. of Idaho, Moscow, ID (United States)
Washington State Univ., Pullman, WA (United States)
Hartwick College, Oneonta, NY (United States)

Soil microbial communities affect the formation of micro-scale mineral-associated organic matter (MAOM) where complex processes, including adhesion, aggregate formation, microbial mineral weathering and soil organic matter stabilization occur in a narrow zone of large biogeochemical gradients. Here we designed a field study to examine carbon stabilization mechanisms by using in-growth mesh bags containing biotite that were placed in a ponderosa pine root zone for 6 months and compared to the surrounding bulk soil. We sought to determine the composition of the microbial community in the mesh bags compared to the surrounding soils, analyze the direct interactions between microbes and biotite, and finally identify the nature of the newly formed MAOM within the mesh-bags. Our results revealed that minerals in the mesh bags were colonized by a microbial community that produced organic matter in situ. The 16S rRNA gene sequencing and ITS2 region characterization showed phylogenetic similarity between the mesh bag and bulk soil archaea/bacteria and fungi microbiomes, with significant differences in alpha- and beta-diversity and species abundances. Organic matter pools in the mesh bags, analyzed by Fourier transform ion cyclotron resonance mass spectrometry, contained protein- (peptides) and lipid-like compounds while the bulk soil OM was comprised of lignin-like and carboxyl-rich alicyclic molecules. These results support that the newly formed biotite associated organic compounds have a microbial signature in the mesh bags. High-resolution electron microscopy documented strongly adhered organic compounds to biotite surfaces, formation of microaggregates, elemental uptake at the microbe (organic matter)-mineral interface, and distortion of biotite layers. Overall, this study shows the direct and indirect involvement of soil microbial communities from the root zone of ponderosa pine in the formation of MAOM, soil organic carbon stabilization, microaggregation, and mineral weathering at micro- and nano-scales.

View Accepted Manuscript (DOE)

Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)

Sponsoring Organization:: USDOE Laboratory Directed Research and Development (LDRD) Program; USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)

Grant/Contract Number:: AC05-76RL01830

OSTI ID:: 1884575

Report Number(s):: PNNL-SA-167716

Journal Information:: Frontiers in Earth Science, Journal Name: Frontiers in Earth Science Vol. 10; ISSN 2296-6463

Publisher:: Frontiers Research FoundationCopyright Statement

Country of Publication:: United States

Language:: English

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