The air mycobiome is decoupled from the soil mycobiome in the California San Joaquin Valley

Wagner, Robert; Montoya, Liliam; Gao, Cheng; Head, Jennifer R.; Remais, Justin; Taylor, John W.

doi:10.1111/mec.16640

The air mycobiome is decoupled from the soil mycobiome in the California San Joaquin Valley

Journal Article · Thu Aug 25 00:00:00 EDT 2022 · Molecular Ecology

DOI:https://doi.org/10.1111/mec.16640· OSTI ID:1883404

^[1]; Montoya, Liliam ^[1]; Gao, Cheng ^[2]; Head, Jennifer R. ^[3]; Remais, Justin ^[4]; ^[1]

Department of Plant &, Microbial Biology University of California Berkeley Berkeley California USA
Institute of Microbiology, Chinese Academy of Sciences Beijing China
Division of Epidemiology University of California Berkeley Berkeley California USA
Division of Environmental Health Sciences University of California Berkeley Berkeley California USA

Abstract

Dispersal is a key force in the assembly of fungal communities and the air is the dominant route of dispersal for most fungi. Understanding the dynamics of airborne fungi is important for determining their source and for helping to prevent fungal disease. This understanding is important in the San Joaquin Valley of California, which is home to 4.2 million people and where the airborne fungus Coccidioides is responsible for the most important fungal disease of otherwise healthy humans, coccidioidomycosis. The San Joaquin Valley is the most productive agricultural region in the United States, with the principal crops grown therein susceptible to fungal pathogens. Here, we characterize the fungal community in soil and air on undeveloped and agricultural land in the San Joaquin Valley using metabarcoding of the internal transcribed spacer 2 variable region of fungal rDNA. Using 1,002 individual samples, we report one of the most extensive studies of fungi sampled simultaneously from air and soil using modern sequencing techniques. We find that the air mycobiome in the San Joaquin Valley is distinct from the soil mycobiome, and that the assemblages of airborne fungi from sites as far apart as 160 km are far more similar to one another than to the fungal communities in nearby soils. Additionally, we present evidence that airborne fungi in the San Joaquin Valley are subject to dispersal limitation and cyclical intra‐annual patterns of community composition. Our findings are broadly applicable to understanding the dispersal of airborne fungi and the taxonomic structure of airborne fungal assemblages.

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Research Organization:: Univ. of California, Oakland, CA (United States)

Sponsoring Organization:: National Institutes of Health (NIH); USDOE; USDOE Office of Science (SC)

Grant/Contract Number:: SC0014081

OSTI ID:: 1883404

Alternate ID(s):: OSTI ID: 2420320
OSTI ID: 1883407

Journal Information:: Molecular Ecology, Journal Name: Molecular Ecology Journal Issue: 19 Vol. 31; ISSN 0962-1083

Publisher:: Wiley-BlackwellCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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59 BASIC BIOLOGICAL SCIENCES
Biochemistry & Molecular Biology
Coccidioides
Environmental Sciences & Ecology
Evolutionary Biology
air
dispersal
mycobiome
soil
ungi

The air mycobiome is decoupled from the soil mycobiome in the California San Joaquin Valley

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