Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Mechanistic basis for maintenance of CHG DNA methylation in plants

Journal Article · · Nat. Commun.

Research Organization:
Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
DOE - Office Of Science; National Institutes of Health (NIH)
OSTI ID:
1879700
Journal Information:
Nat. Commun., Vol. 13
Country of Publication:
United States
Language:
ENGLISH

References (55)

DNA methylation patterns and epigenetic memory journal January 2002
The language of covalent histone modifications journal January 2000
Selective inhibition of EZH2 and EZH1 enzymatic activity by a small molecule suppresses MLL-rearranged leukemia journal January 2015
Linking DNA methylation and histone modification: patterns and paradigms journal May 2009
DNA methylation pathways and their crosstalk with histone methylation journal August 2015
Establishing, maintaining and modifying DNA methylation patterns in plants and animals journal February 2010
Non-CG Methylation in the Human Genome journal August 2015
Dynamic changes in the human methylome during differentiation journal February 2010
Human DNA methylomes at base resolution show widespread epigenomic differences journal October 2009
Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome journal February 2012
Dynamics and function of DNA methylation in plants journal May 2018
Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thaliana journal January 1993
Requirement of CHROMOMETHYLASE3 for Maintenance of CpXpG Methylation journal May 2001
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis journal December 2013
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity journal May 2014
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning journal February 2008
DNA Methylation Signatures of the Plant Chromomethyltransferases journal December 2016
Substrate deformation regulates DRM2-mediated DNA methylation in plants journal June 2021
Maize Chromomethylase Zea methyltransferase2 Is Required for CpNpG Methylation journal August 2001
Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants journal September 2012
A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase journal January 2019
The Site-Specific Installation of Methyl-Lysine Analogs into Recombinant Histones journal March 2007
5-Fluorocytosine in DNA is a mechanism-based inhibitor of HhaI methylase journal July 1988
Structure-Based Mechanistic Insights into DNMT1-Mediated Maintenance DNA Methylation journal February 2012
Generation of a luciferase-based reporter for CHH and CG DNA methylation inArabidopsis thaliana journal April 2013
Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome journal January 2013
Cytosolic acetyl-CoA promotes histone acetylation predominantly at H3K27 in Arabidopsis journal September 2017
Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin journal October 2018
Base Pair Opening in Three DNA-unwinding Elements journal May 2005
Modelling Extreme Stretching of DNA journal June 1996
A Histone Acetyltransferase Regulates Active DNA Demethylation in Arabidopsis journal June 2012
The DNA demethylase ROS1 targets genomic regions with distinct chromatin modifications journal October 2016
AtHDA6 functions as an H3K18ac eraser to maintain pericentromeric CHG methylation in Arabidopsis thaliana journal August 2021
Structural Basis of DNMT1 and DNMT3A-Mediated DNA Methylation journal December 2018
Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms journal July 2020
Hhal methyltransferase flips its target base out of the DNA helix journal January 1994
Structural insights into CpG-specific DNA methylation by human DNA methyltransferase 3B journal February 2020
The crystal structure of Haelll methyltransferase covalently complexed to DNA: An extrahelical cytosine and rearranged base pairing journal July 1995
DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation journal July 2020
Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation journal May 2020
Structural basis for DNMT3A-mediated de novo DNA methylation journal February 2018
An optimized potential function for the calculation of nucleic acid interaction energies I. Base stacking journal October 1978
[20] Processing of X-ray diffraction data collected in oscillation mode book January 1997
Phaser crystallographic software journal July 2007
Coot model-building tools for molecular graphics journal November 2004
PHENIX : building new software for automated crystallographic structure determination journal October 2002
A rapid and non-destructive screenable marker, FAST, for identifying transformed seeds of Arabidopsis thaliana journal February 2010
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA journal June 2013
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation journal April 2010
fastp: an ultra-fast all-in-one FASTQ preprocessor journal September 2018
BSMAP: whole genome bisulfite sequence MAPping program journal July 2009
deepTools: a flexible platform for exploring deep-sequencing data journal May 2014
Trimmomatic: a flexible trimmer for Illumina sequence data journal April 2014
Fast and accurate short read alignment with Burrows-Wheeler transform journal May 2009
Model-based Analysis of ChIP-Seq (MACS) journal January 2008

Related Subjects