The microbiomes of deep-sea hydrothermal vents: distributed globally, shaped locally
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March 2019 |
Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria
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November 2008 |
Spectrophotometric Determination Of Hydrogen Sulfide In Natural Waters
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May 1969 |
Chemistry of submarine hydrothermal solutions at Guaymas Basin, Gulf of California
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November 1985 |
Physiological function and catalytic versatility of bacterial multihaem cytochromes c involved in nitrogen and sulfur cycling
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November 2011 |
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
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December 2015 |
Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane : The partner bacterium in thermophilic methanotrophy
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April 2016 |
Fast and accurate short read alignment with Burrows-Wheeler transform
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May 2009 |
KEGG: Kyoto Encyclopedia of Genes and Genomes
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January 2000 |
Pyrodictium abyssi sp. nov. Represents a Novel Heterotrophic Marine Archaeal Hyperthermophile Growing at 110°C
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July 1991 |
Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents
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December 2013 |
Integrative modeling of gene and genome evolution roots the archaeal tree of life
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May 2017 |
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
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January 2015 |
The prokaryotic Mo/W-bisPGD enzymes family: A catalytic workhorse in bioenergetic
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August 2013 |
Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments
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May 2002 |
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
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March 2010 |
phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes
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October 2020 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
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March 2010 |
Biogeography and ecology of the rare and abundant microbial lineages in deep-sea hydrothermal vents
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December 2014 |
Benzoyl-Coenzyme A Reductase (Dearomatizing), a Key Enzyme of Anaerobic Aromatic Metabolism. ATP Dependence of the Reaction, Purification and Some Properties of the Enzyme from Thauera Aromatica Strain K172
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December 1995 |
Subseafloor microbial communities in hydrogen‐rich vent fluids from hydrothermal systems along the M id‐ C ayman R ise
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January 2016 |
Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids
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March 2017 |
Fast and sensitive protein alignment using DIAMOND
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November 2014 |
Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments
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November 2011 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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January 2014 |
Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries
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January 2020 |
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
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November 2018 |
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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May 2012 |
Microbial Diversity of Hydrothermal Sediments in the Guaymas Basin: Evidence for Anaerobic Methanotrophic Communities
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April 2002 |
A complete domain-to-species taxonomy for Bacteria and Archaea
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April 2020 |
The Escanaba Trough, Gorda Ridge hydrothermal system: Temporal stability and subseafloor complexity
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November 2005 |
Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics
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January 2020 |
Basic local alignment search tool
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October 1990 |
DADA2: High-resolution sample inference from Illumina amplicon data
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May 2016 |
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
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August 2004 |
The Guaymas Basin Hiking Guide to Hydrothermal Mounds, Chimneys, and Microbial Mats: Complex Seafloor Expressions of Subsurface Hydrothermal Circulation
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February 2016 |
Thermophilic anaerobic oxidation of methane by marine microbial consortia
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June 2011 |
Microbial Community Structure of Deep-sea Hydrothermal Vents on the Ultraslow Spreading Southwest Indian Ridge
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June 2017 |
Predicting the optimal growth temperatures of prokaryotes using only genome derived features
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January 2019 |
Pyrolobus fumarii , gen. and sp. nov., represents a novel group of archaea, extending the upper temperature limit for life to 113�C
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February 1997 |
Isolation of an archaeon at the prokaryote–eukaryote interface
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January 2020 |
Cell proliferation at 122 C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation
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July 2008 |
Asgard archaea capable of anaerobic hydrocarbon cycling
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April 2019 |
Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume: Microbial diversity of a deep-sea hydrothermal plume
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February 2010 |
Microbial community structure across fluid gradients in the Juan de Fuca Ridge hydrothermal system
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September 2012 |
Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
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December 2020 |
Cutadapt removes adapter sequences from high-throughput sequencing reads
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May 2011 |
Thermal and geochemical influences on microbial biogeography in the hydrothermal sediments of Guaymas Basin, Gulf of California: Investigation of microbial ecology in hydrothermal sediments
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January 2016 |
DNA recovery from soils of diverse composition.
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January 1996 |
Global dispersion and local diversification of the methane seep microbiome
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March 2015 |
Discovery of Hydrothermal Vent Fields on Alarcón Rise and in Southern Pescadero Basin, Gulf of California
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December 2018 |
Microbial Communities in Methane- and Short Chain Alkane-Rich Hydrothermal Sediments of Guaymas Basin
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January 2016 |
Extending the Upper Temperature Limit for Life
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August 2003 |
Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates
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April 2012 |
Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane
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September 2013 |
Anaerobic oxidation of short-chain hydrocarbons by marine sulphate-reducing bacteria
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September 2007 |
Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups
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July 2021 |
Experimentally-validated correlation analysis reveals new anaerobic methane oxidation partnerships with consortium-level heterogeneity in diazotrophy
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October 2020 |
The 2.8 Å structure of hydroxylamine oxidoreductase from a nitrifying chemoautotrophic bacterium, Nitrosomonas europaea
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April 1997 |
The octahaem MccA is a haem c–copper sulfite reductase
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February 2015 |
CATH: expanding the horizons of structure-based functional annotations for genome sequences
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November 2018 |
Biogeochemical Evidence that Thermophilic Archaea Mediate the Anaerobic Oxidation of Methane
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March 2003 |
Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system
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March 2016 |
Octaheme tetrathionate reductase is a respiratory enzyme with novel heme ligation
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September 2004 |
Search and clustering orders of magnitude faster than BLAST
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August 2010 |
New Microbial Lineages Capable of Carbon Fixation and Nutrient Cycling in Deep-Sea Sediments of the Northern South China Sea
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May 2019 |
The importance of designating type material for uncultured taxa
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January 2019 |
CDD: NCBI's conserved domain database
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November 2014 |
Acoustically detected hydrocarbon plumes rising from 2-km depths in Guaymas Basin, Gulf of California
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January 1985 |
Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments
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August 2017 |
The Pfam protein families database in 2019
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October 2018 |
How Many Bootstrap Replicates Are Necessary?
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March 2010 |
Diversity and Distribution of Methanotrophic Archaea at Cold Seeps
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January 2005 |
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
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July 2019 |
Interrelationships Between Vent Fluid Chemistry, Temperature, Seismic Activity, and Biological Community Structure at a Mussel-Dominated, Deep-Sea Hydrothermal Vent Along the East Pacific Rise
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March 2008 |
Epsilonproteobacterial hydroxylamine oxidoreductase ( ε Hao): characterization of a ‘missing link’ in the multihaem cytochrome c family : Epsilonproteobacterial hydroxylamine oxidoreductase
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May 2017 |
Endemic hydrothermal vent species identified in the open ocean seed bank
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June 2016 |
Anammox Biochemistry: a Tale of Heme c Proteins
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December 2016 |
Thermophilic archaea activate butane via alkyl-coenzyme M formation
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October 2016 |
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
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November 2018 |
Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments
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April 2019 |
Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments
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November 2018 |
Sediment-hosted geothermal systems: Review and first global mapping
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May 2019 |
Methanopyrus kandleri, gen. and sp. nov. represents a novel group of hyperthermophilic methanogens, growing at 110�C
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September 1991 |
Characterization of the first cultured free-living representative of Candidatus Izemoplasma uncovers its unique biology
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March 2021 |
Global patterns in the biogeography of bacterial taxa: Global bacterial biogeography
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August 2010 |
The COG database: an updated version includes eukaryotes
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January 2003 |
Community-led, integrated, reproducible multi-omics with anvi’o
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December 2020 |
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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January 2019 |
Dissolved free amino acids in hydrothermal vent habitats of the Guaymas Basin
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November 1989 |
A Constant Flux of Diverse Thermophilic Bacteria into the Cold Arctic Seabed
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September 2009 |
Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center
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June 2015 |
Hyperthermophilic archaea are thriving in deep North Sea and Alaskan oil reservoirs
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October 1993 |
Variation in styles of rifting in the Gulf of California
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July 2007 |
Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents
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October 2017 |
Phylogenomic analysis of Candidatus ‘Izimaplasma’ species: free-living representatives from a Tenericutes clade found in methane seeps
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April 2016 |