Pore-Scale Numerical Investigation of Evolving Porosity and Permeability Driven by Biofilm Growth

Jung, Heewon; Meile, Christof

doi:10.1007/s11242-021-01654-7

Title: Pore-Scale Numerical Investigation of Evolving Porosity and Permeability Driven by Biofilm Growth

Journal Article · Tue Jul 27 00:00:00 EDT 2021 · Transport in Porous Media

DOI:https://doi.org/10.1007/s11242-021-01654-7· OSTI ID:1853613

; Meile, Christof

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Research Organization:: California Institute of Technology (CalTech), Pasadena, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

DOE Contract Number:: SC0020373

OSTI ID:: 1853613

Journal Information:: Transport in Porous Media, Vol. 139, Issue 2; ISSN 0169-3913

Publisher:: Springer

Country of Publication:: United States

Language:: English

References (55)

Effect of bioclogging in porous media on complex conductivity signatures Abdel Aal, Gamal Z.; Atekwana, Estella A.; Atekwana, Eliot A. Journal of Geophysical Research, Vol. 115 https://doi.org/10.1029/2009JG001159	journal	January 2010
On breakdown of macroscopic models of mixing-controlled heterogeneous reactions in porous media Battiato, I.; Tartakovsky, D. M.; Tartakovsky, A. M. Advances in Water Resources, Vol. 32, Issue 11 https://doi.org/10.1016/j.advwatres.2009.08.008	journal	November 2009
Environmental Impact and Mechanisms of the Biological Clogging of Saturated Soils and Aquifer Materials Baveye, Philippe; Vandevivere, Philippe; Hoyle, Blythe L. Critical Reviews in Environmental Science and Technology, Vol. 28, Issue 2 https://doi.org/10.1080/10643389891254197	journal	April 1998
An immersed boundary-lattice Boltzmann model for biofilm growth in porous media Benioug, M.; Golfier, F.; Oltéan, C. Advances in Water Resources, Vol. 107 https://doi.org/10.1016/j.advwatres.2017.06.009	journal	September 2017
A Model for Collision Processes in Gases. I. Small Amplitude Processes in Charged and Neutral One-Component Systems Bhatnagar, P. L.; Gross, E. P.; Krook, M. Physical Review, Vol. 94, Issue 3 https://doi.org/10.1103/PhysRev.94.511	journal	May 1954
Influence of biofilm accumulation on porous media hydrodynamics Cunningham, Alfred B.; Characklis, William G.; Abedeen, Feisal Environmental Science & Technology, Vol. 25, Issue 7 https://doi.org/10.1021/es00019a013	journal	July 1991
Theoretical predictions of the effective thermodiffusion coefficients in porous media Davarzani, H.; Marcoux, M.; Quintard, M. International Journal of Heat and Mass Transfer, Vol. 53, Issue 7-8 https://doi.org/10.1016/j.ijheatmasstransfer.2009.11.044	journal	March 2010
Permeability, conductivity, and pore geometry of sandstone Doyen, Philippe M. Journal of Geophysical Research, Vol. 93, Issue B7 https://doi.org/10.1029/JB093iB07p07729	journal	January 1988
Bioaugmentation for Accelerated In Situ Anaerobic Bioremediation Ellis, David E.; Lutz, Edward J.; Odom, J. Martin Environmental Science & Technology, Vol. 34, Issue 11 https://doi.org/10.1021/es990638e	journal	June 2000
Pore-network modeling of biofilm evolution in porous media Ezeuko, C. C.; Sen, A.; Grigoryan, A. Biotechnology and Bioengineering, Vol. 108, Issue 10 https://doi.org/10.1002/bit.23183	journal	May 2011
The biofilm matrix Flemming, Hans-Curt; Wingender, Jost Nature Reviews Microbiology, Vol. 8, Issue 9 https://doi.org/10.1038/nrmicro2415	journal	August 2010
Role of chemotaxis in the transport of bacteria through saturated porous media Ford, Roseanne M.; Harvey, Ronald W. Advances in Water Resources, Vol. 30, Issue 6-7 https://doi.org/10.1016/j.advwatres.2006.05.019	journal	June 2007
On the ability of a Darcy-scale model to capture wormhole formation during the dissolution of a porous medium Golfier, F.; Zarcone, C.; Bazin, B. Journal of Fluid Mechanics, Vol. 457 https://doi.org/10.1017/S0022112002007735	journal	April 2002
Biofilms as living catalysts in continuous chemical syntheses Halan, Babu; Buehler, Katja; Schmid, Andreas Trends in Biotechnology, Vol. 30, Issue 9 https://doi.org/10.1016/j.tibtech.2012.05.003	journal	September 2012
Engineering the biosynthesis of novel rhamnolipids in Escherichia coli for enhanced oil recovery Han, L.; Liu, P.; Peng, Y. Journal of Applied Microbiology, Vol. 117, Issue 1 https://doi.org/10.1111/jam.12515	journal	April 2014
Upscaling of the advection–diffusion–reaction equation with Monod reaction Heße, F.; Radu, F. A.; Thullner, M. Advances in Water Resources, Vol. 32, Issue 8 https://doi.org/10.1016/j.advwatres.2009.05.009	journal	August 2009
Porosity–Permeability Relations for Evolving Pore Space: A Review with a Focus on (Bio-)geochemically Altered Porous Media Hommel, Johannes; Coltman, Edward; Class, Holger Transport in Porous Media, Vol. 124, Issue 2 https://doi.org/10.1007/s11242-018-1086-2	journal	May 2018
A novel method to model and characterize in-situ bio-surfactant production in microbial enhanced oil recovery Hosseininoosheri, Pooneh; Lashgari, Hamid R.; Sepehrnoori, Kamy Fuel, Vol. 183 https://doi.org/10.1016/j.fuel.2016.06.035	journal	November 2016
A new pore-scale model for linear and non-linear heterogeneous dissolution and precipitation Huber, Christian; Shafei, Babak; Parmigiani, Andrea Geochimica et Cosmochimica Acta, Vol. 124 https://doi.org/10.1016/j.gca.2013.09.003	journal	January 2014
Upscaling of microbially driven first-order reactions in heterogeneous porous media Jung, Heewon; Meile, Christof Journal of Contaminant Hydrology, Vol. 224 https://doi.org/10.1016/j.jconhyd.2019.04.006	journal	July 2019
Numerical investigation of microbial quorum sensing under various flow conditions Jung, Heewon; Meile, Christof D. PeerJ, Vol. 8 https://doi.org/10.7717/peerj.9942	journal	January 2020
Simulation of dissolution and precipitation in porous media: DISSOLUTION AND PRECIPITATION IN POROUS MEDIA Kang, Qinjun; Zhang, Dongxiao; Chen, Shiyi Journal of Geophysical Research: Solid Earth, Vol. 108, Issue B10 https://doi.org/10.1029/2003JB002504	journal	October 2003
Development of a biobarrier for the remediation of PCE-contaminated aquifer Kao, C. M.; Chen, S. C.; Liu, J. K. Chemosphere, Vol. 43, Issue 8 https://doi.org/10.1016/S0045-6535(00)00190-9	journal	June 2001
Biomass evolution in porous media and its effects on permeability under starvation conditions Kim, Dong-Shik; Fogler, H. Scott Biotechnology and Bioengineering, Vol. 69, Issue 1 https://doi.org/10.1002/(SICI)1097-0290(20000705)69:1<47::AID-BIT6>3.0.CO;2-N	journal	July 2000
Pore-scale simulation of biomass growth along the transverse mixing zone of a model two-dimensional porous medium: PORE-SCALE SIMULATION OF BIOMASS GROWTH Knutson, C. E.; Werth, C. J.; Valocchi, A. J. Water Resources Research, Vol. 41, Issue 7 https://doi.org/10.1029/2004WR003459	journal	July 2005
Biofilm barriers to contain and degrade dissolved trichloroethylene Komlos, John; Cunningham, Alfred B.; Camper, Anne K. Environmental Progress, Vol. 23, Issue 1 https://doi.org/10.1002/ep.10003	journal	January 2004
The Lattice Boltzmann Method Krüger, Timm; Kusumaatmaja, Halim; Kuzmin, Alexandr Graduate Texts in Physics https://doi.org/10.1007/978-3-319-44649-3	book	January 2017
Palabos: Parallel Lattice Boltzmann Solver Latt, Jonas; Malaspinas, Orestis; Kontaxakis, Dimitrios Computers & Mathematics with Applications, Vol. 81 https://doi.org/10.1016/j.camwa.2020.03.022	journal	January 2021
Microbial Enhanced Oil Recovery (MEOR) Lazar, I.; Petrisor, I. G.; Yen, T. F. Petroleum Science and Technology, Vol. 25, Issue 11 https://doi.org/10.1080/10916460701287714	journal	November 2007
Bioreactive Barriers: A Comparison of Bioaugmentation and Biostimulation for Chlorinated Solvent Remediation Lendvay, J. M.; Löffler, F. E.; Dollhopf, M. Environmental Science & Technology, Vol. 37, Issue 7 https://doi.org/10.1021/es025985u	journal	April 2003
Experimental determination of porosity and permeability changes induced by injection of CO2 into carbonate rocks Luquot, L.; Gouze, P. Chemical Geology, Vol. 265, Issue 1-2 https://doi.org/10.1016/j.chemgeo.2009.03.028	journal	July 2009
Multicomponent simulation of wastewater-derived nitrogen and carbon in shallow unconfined aquifers MacQuarrie, Kerry T. B.; Sudicky, Edward A. Journal of Contaminant Hydrology, Vol. 47, Issue 1 https://doi.org/10.1016/S0169-7722(00)00137-6	journal	January 2001
Applications of microalgal biofilms for wastewater treatment and bioenergy production Miranda, Ana F.; Ramkumar, Narasimhan; Andriotis, Constandino Biotechnology for Biofuels, Vol. 10, Issue 1 https://doi.org/10.1186/s13068-017-0798-9	journal	May 2017
Computations of Absolute Permeability on Micro-CT Images Mostaghimi, Peyman; Blunt, Martin J.; Bijeljic, Branko Mathematical Geosciences, Vol. 45, Issue 1 https://doi.org/10.1007/s11004-012-9431-4	journal	December 2012
In Situ Spatial Patterns of Soil Bacterial Populations, Mapped at Multiple Scales, in an Arable Soil Nunan, N.; Wu, K.; Young, I. M. Microbial Ecology, Vol. 44, Issue 4 https://doi.org/10.1007/s00248-002-2021-0	journal	December 2002
Effect of shear stress and growth conditions on detachment and physical properties of biofilms Paul, Etienne; Ochoa, Juan Carlos; Pechaud, Yoan Water Research, Vol. 46, Issue 17 https://doi.org/10.1016/j.watres.2012.07.029	journal	November 2012
Biofilm growth in porous media: Experiments, computational modeling at the porescale, and upscaling Peszynska, Malgorzata; Trykozko, Anna; Iltis, Gabriel Advances in Water Resources, Vol. 95 https://doi.org/10.1016/j.advwatres.2015.07.008	journal	September 2016
Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach Picioreanu, Cristian; van Loosdrecht, Mark C. M.; Heijnen, Joseph J. Biotechnology and Bioengineering, Vol. 58, Issue 1 https://doi.org/10.1002/(SICI)1097-0290(19980405)58:1<101::AID-BIT11>3.0.CO;2-M	journal	April 1998
Towards optimum permeability reduction in porous media using biofilm growth simulations Pintelon, T. R. R.; Graf von der Schulenburg, D. A.; Johns, M. L. Biotechnology and Bioengineering, Vol. 103, Issue 4 https://doi.org/10.1002/bit.22303	journal	July 2009
The effect of biofilm permeability on bio-clogging of porous media Pintelon, Thomas R. R.; Picioreanu, Cristian; van Loosdrecht, Mark C. M. Biotechnology and Bioengineering, Vol. 109, Issue 4 https://doi.org/10.1002/bit.24381	journal	December 2011
Transport in ordered and disordered porous media III: Closure and comparison between theory and experiment Quintard, Michel; Whitaker, Stephen Transport in Porous Media, Vol. 15, Issue 1 https://doi.org/10.1007/BF01046157	journal	April 1994
Intra-colony channels in E. coli function as a nutrient uptake system Rooney, Liam M.; Amos, William B.; Hoskisson, Paul A. The ISME Journal, Vol. 14, Issue 10 https://doi.org/10.1038/s41396-020-0700-9	journal	June 2020
Beyond Kozeny–Carman: Predicting the Permeability in Porous Media Schulz, Raphael; Ray, Nadja; Zech, Simon Transport in Porous Media, Vol. 130, Issue 2 https://doi.org/10.1007/s11242-019-01321-y	journal	August 2019
Biofilm dispersion and quorum sensing Solano, Cristina; Echeverz, Maite; Lasa, Iñigo Current Opinion in Microbiology, Vol. 18 https://doi.org/10.1016/j.mib.2014.02.008	journal	April 2014
Mineral dissolution and wormholing from a pore-scale perspective Soulaine, Cyprien; Roman, Sophie; Kovscek, Anthony Journal of Fluid Mechanics, Vol. 827 https://doi.org/10.1017/jfm.2017.499	journal	August 2017
The Impact of Pore-Size Heterogeneities on the Spatiotemporal Variation of Microbial Metabolic Activity in Porous Media Stolpovsky, Konstantin; Gharasoo, Mehdi; Thullner, Martin Soil Science, Vol. 177, Issue 2 https://doi.org/10.1097/SS.0b013e318241105d	journal	January 2012
Biofilms as Complex Differentiated Communities Stoodley, P.; Sauer, K.; Davies, D. G. Annual Review of Microbiology, Vol. 56, Issue 1 https://doi.org/10.1146/annurev.micro.56.012302.160705	journal	October 2002
An improved pore-scale biofilm model and comparison with a microfluidic flow cell experiment: A PORE-SCALE BIOFILM MODEL AND COMPARISON WITH AN EXPERIMENT Tang, Youneng; Valocchi, Albert J.; Werth, Charles J. Water Resources Research, Vol. 49, Issue 12 https://doi.org/10.1002/2013WR013843	journal	December 2013
Comparison of bioclogging effects in saturated porous media within one- and two-dimensional flow systems Thullner, Martin Ecological Engineering, Vol. 36, Issue 2 https://doi.org/10.1016/j.ecoleng.2008.12.037	journal	February 2010
Computational pore network modeling of the influence of biofilm permeability on bioclogging in porous media Thullner, Martin; Baveye, Philippe Biotechnology and Bioengineering, Vol. 99, Issue 6 https://doi.org/10.1002/bit.21708	journal	January 2008
Liquid transport facilitated by channels in Bacillus subtilis biofilms Wilking, J. N.; Zaburdaev, V.; De Volder, M. Proceedings of the National Academy of Sciences, Vol. 110, Issue 3 https://doi.org/10.1073/pnas.1216376110	journal	December 2012
The role of scaling laws in upscaling Wood, Brian D. Advances in Water Resources, Vol. 32, Issue 5 https://doi.org/10.1016/j.advwatres.2008.08.015	journal	May 2009
Implementation and evaluation of permeability-porosity and tortuosity-porosity relationships linked to mineral dissolution-precipitation Xie, Mingliang; Mayer, K. Ulrich; Claret, Francis Computational Geosciences, Vol. 19, Issue 3 https://doi.org/10.1007/s10596-014-9458-3	journal	November 2014
Density, porosity, and pore structure of biofilms Zhang, Tian C.; Bishop, Paul L. Water Research, Vol. 28, Issue 11 https://doi.org/10.1016/0043-1354(94)90042-6	journal	November 1994
Pore scale study of flow in porous media: Scale dependency, REV, and statistical REV Zhang, Dongxiao; Zhang, Raoyang; Chen, Shiyi Geophysical Research Letters, Vol. 27, Issue 8 https://doi.org/10.1029/1999GL011101	journal	April 2000

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