skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Proteomic Signatures of Antimicrobial Resistance in Yersinia pestis and Francisella tularensis

Journal Article · · Frontiers in Medicine

Antimicrobial resistance (AMR) is a well-recognized, widespread, and growing issue of concern. With increasing incidence of AMR, the ability to respond quickly to infection with or exposure to an AMR pathogen is critical. Approaches that could accurately and more quickly identify whether a pathogen is AMR also are needed to more rapidly respond to existing and emerging biological threats. We examined proteins associated with paired AMR and antimicrobial susceptible (AMS) strains of Yersinia pestis and Francisella tularensis, causative agents of the diseases plague and tularemia, respectively, to identify whether potential existed to use proteins as signatures of AMR. We found that protein expression was significantly impacted by AMR status. Antimicrobial resistance-conferring proteins were expressed even in the absence of antibiotics in growth media, and the abundance of 10–20% of cellular proteins beyond those that directly confer AMR also were significantly changed in both Y. pestis and F. tularensis. Most strikingly, the abundance of proteins involved in specific metabolic pathways and biological functions was altered in all AMR strains examined, independent of species, resistance mechanism, and affected cellular antimicrobial target. We have identified features that distinguish between AMR and AMS strains, including a subset of features shared across species with different resistance mechanisms, which suggest shared biological signatures of resistance. These features could form the basis of novel approaches to identify AMR phenotypes in unknown strains.

Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
AC05-76RL01830
OSTI ID:
1846732
Report Number(s):
PNNL-SA-168442
Journal Information:
Frontiers in Medicine, Vol. 9; ISSN 2296-858X
Publisher:
Frontiers Media S.A.Copyright Statement
Country of Publication:
United States
Language:
English

References (33)

Prokka: rapid prokaryotic genome annotation journal March 2014
CanSNPer: a hierarchical genotype classifier of clonal pathogens journal February 2014
Mechanisms of fitness cost reduction for rifampicin-resistant strains with deletion or duplication mutations in rpoB journal November 2018
Circlator: automated circularization of genome assemblies using long sequencing reads journal December 2015
Overexpression of the multidrug efflux pump SmeDEF impairs Stenotrophomonas maltophilia physiology journal February 2004
Multidrug Resistance in Yersinia pestis Mediated by a Transferable Plasmid journal September 1997
No Resistance Plasmid in Yersinia pestis, North America journal May 2010
Galleria mellonella Reveals Niche Differences Between Highly Pathogenic and Closely Related Strains of Francisella spp. journal June 2018
The PRIDE database and related tools and resources in 2019: improving support for quantification data journal November 2018
Effects of Environment on Compensatory Mutations to Ameliorate Costs of Antibiotic Resistance journal February 2000
The Fitness Cost of Streptomycin Resistance Depends on rpsL Mutation, Carbon Source and RpoS (σS) journal October 2009
A global view of antibiotic resistance journal January 2009
Minimap2: pairwise alignment for nucleotide sequences journal May 2018
Trimmomatic: a flexible trimmer for Illumina sequence data journal April 2014
MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses journal May 2016
Vaccines Against Antimicrobial Resistance journal June 2020
RNA‑seq analyses of antibiotic resistance mechanisms in Serratia�marcescens journal May 2019
Quantitative proteome analysis of an antibiotic resistant Escherichia coli exposed to tetracycline reveals multiple affected metabolic and peptidoglycan processes journal March 2017
Yersinia pestis and plague: an updated view on evolution, virulence determinants, immune subversion, vaccination, and diagnostics journal April 2019
Can proteomics elucidate mechanisms of antimicrobial resistance in Neisseria gonorrhoeae that whole genome sequencing is unable to identify? An analysis of protein expression within the 2016 WHO N. gonorrhoeae reference strains journal December 2019
Proteomic analysis of four Clostridium botulinum strains identifies proteins that link biological responses to proteomic signatures journal October 2018
Resistance of Yersinia pestis to Antimicrobial Agents journal September 2006
Enhanced in vivo fitness of fluoroquinolone-resistant Campylobacter jejuni in the absence of antibiotic selection pressure journal January 2005
Clonality of erythromycin resistance in Francisella tularensis journal June 2016
Reorganized Genomic Taxonomy of Francisellaceae Enables Design of Robust Environmental PCR Assays for Detection of Francisella tularensis journal January 2021
Modern Tools for Rapid Diagnostics of Antimicrobial Resistance journal July 2020
Comprehensive phenotypic characterization of rifampicin resistance mutations in Salmonella provides insight into the evolution of resistance in Mycobacterium tuberculosis journal October 2014
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification journal November 2008
Antibiotic-dependent perturbations of extended spectrum beta-lactamase producing Klebsiella pneumoniae proteome journal March 2017
Genetic Determinants of Antibiotic Resistance in Francisella journal May 2021
The Sequence Alignment/Map format and SAMtools journal June 2009
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads book January 2013
Comparative transcriptomics of multidrug-resistant Acinetobacter baumannii in response to antibiotic treatments journal February 2018