Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Fast and noise-tolerant determination of the center of rotation in tomography

Journal Article · · Journal of Synchrotron Radiation (Online)

High-quality tomographic reconstruction is not possible without the accurate localization of the center of rotation. Poor localization leads to artifacts in the data and can even cause reconstructions to fail. There are many approaches to solving this problem, some of which involve the collection of full sinograms, or even provisional tomographic reconstructions, in order to determine the center of rotation. Here, a simple method based on the expected symmetry of the Fourier transform of summed projections approximately 180° apart is presented; unlike cross-correlation methods, it requires only a single Fourier transform to compute, and uses mainly low spatial frequency information which is less susceptible to noise. This approach is shown to be fast, and robust against poor signal-to-noise as well as to projection images acquired at angles that are not exactly 180° apart. This rapid method can be useful as a first step in the processing of tomographic data.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE; USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1841050
Alternate ID(s):
OSTI ID: 1841772
Journal Information:
Journal of Synchrotron Radiation (Online), Journal Name: Journal of Synchrotron Radiation (Online) Journal Issue: 2 Vol. 29; ISSN 1600-5775; ISSN JSYRES
Publisher:
International Union of Crystallography (IUCr)Copyright Statement
Country of Publication:
Denmark
Language:
English

References (35)

Modelling the Power Spectra of Natural Images: Statistics and Information journal September 1996
The tuning fork artifact in computerized tomography journal July 1979
A multi-resolution approach to the 3D reconstruction from an electron microscope tilt series solving the alignment problem without gold particles journal July 1989
Double-tilt electron tomography journal October 1995
The relevance of dose-fractionation in tomography of radiation-sensitive specimens journal October 1995
Alignment of electron tomographic series by correlation without the use of gold particles journal April 1996
Tilted view reconstruction in optical microscopy. Three-dimensional reconstruction of Drosophila melanogaster embryo nuclei journal January 1989
Automatic alignment and reconstruction of images for soft X-ray tomography journal February 2012
GENFIRE: A generalized Fourier iterative reconstruction algorithm for high-resolution 3D imaging journal September 2017
Rapid alignment of nanotomography data using joint iterative reconstruction and reprojection journal September 2017
Correction of center of rotation and projection angle in synchrotron X-ray computed tomography journal June 2018
Correction of artefacts in optical projection tomography journal September 2005
TomoBank: a tomographic data repository for computational x-ray science journal February 2018
The Reconstruction of a Three-Dimensional Structure from Projections and its Application to Electron Microscopy journal June 1970
Alignment of low-dose X-ray fluorescence tomography images using differential phase contrast journal December 2013
TomoPy: a framework for the analysis of synchrotron tomographic data journal August 2014
A convolutional neural network approach to calibrating the rotation axis for X-ray computed tomography journal January 2017
Calculation of the rotational centers in computed tomography sinograms journal January 1990
On estimating signal-to-noise ratio using the sample correlation coefficient (Corresp.) journal January 1974
Reconstruction Algorithm for Fan Beam with a Displaced Center-of-Rotation journal March 1986
The Fourier reconstruction of a head section journal June 1974
Micro computed tomography: removal of translational stage backlash journal August 1993
Spatiotemporal computed tomography of dynamic processes journal December 2011
A robust procedure for determination of center of rotation in tomography conference October 2004
Measurement of center of rotation for projection in x-ray two-dimensional computed tomography system
  • Li, Baolei; Zhang, Yaojun; Mo, Yang
  • Sixth International Symposium on Precision Engineering Measurements and Instrumentation, SPIE Proceedings https://doi.org/10.1117/12.885217
conference December 2010
Novel Properties Of The Fourier Decomposition Of The Sinogram
  • Edholm, Paul R.; Lewitt, Robert M.; Lindholm, Bernt
  • Physics and Engineering of Computerized Multidimensional Imaging and Processing, SPIE Proceedings https://doi.org/10.1117/12.966672
conference April 1988
Color and spatial structure in natural scenes journal January 1987
Correction for specimen movement and rotation errors for in-vivo Optical Projection Tomography journal January 2010
Automated determination of the center of rotation in tomography data journal January 2006
Signal-to-noise and radiation exposure considerations in conventional and diffraction x-ray microscopy journal January 2009
Reliable method for calculating the center of rotation in parallel-beam tomography journal January 2014
Efficient subpixel image registration algorithms journal January 2008
Influence of Electron Noise on Three-dimensional Image Reconstruction journal December 1976
An Algorithm for the Evaluation of Finite Trigonometric Series journal January 1958
scikit-image: image processing in Python journal January 2014

Similar Records

Calculation of the rotational centers in computed tomography sinograms
Journal Article · Wed Aug 01 00:00:00 EDT 1990 · IEEE Transactions on Nuclear Science (Institute of Electrical and Electronics Engineers); (USA) · OSTI ID:6420834

X-ray tomography of extended objects: a comparison of data acquisition approaches
Journal Article · Tue Oct 23 20:00:00 EDT 2018 · Journal of the Optical Society of America. A, Optics, Image Science, and Vision · OSTI ID:1481857