Transcriptional Regulation and Its Misregulation in Disease
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March 2013 |
The Human Transcription Factors
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October 2018 |
Transcription factors: An overview
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December 1997 |
Transcription factors: specific DNA binding and specific gene regulation
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June 2014 |
Transcription factor–DNA binding: beyond binding site motifs
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April 2017 |
Transcription factors as readers and effectors of DNA methylation
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August 2016 |
Impact of cytosine methylation on DNA binding specificities of human transcription factors
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May 2017 |
Zinc Finger Readers of Methylated DNA
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October 2018 |
Epigenetic regulatory functions of DNA modifications: 5-methylcytosine and beyond
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July 2015 |
Epigenetic mechanisms in mammals
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November 2008 |
Chromatin modification and epigenetic reprogramming in mammalian development
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September 2002 |
Epigenetic Regulation: A New Frontier for Biomedical Engineers
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June 2017 |
DNA methylation patterns and epigenetic memory
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January 2002 |
DNA Methylation in Mammals
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May 2014 |
CpG-rich islands and the function of DNA methylation
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May 1986 |
Genomic DNA methylation: the mark and its mediators
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February 2006 |
Finding the fifth base: Genome-wide sequencing of cytosine methylation
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March 2009 |
DNA methylation affects the formation of active chromatin
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February 1986 |
How does DNA methylation repress transcription?
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November 1997 |
The role of methyl-binding proteins in chromatin organization and epigenome maintenance
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December 2011 |
DNA Methylation Increases Nucleosome Compaction and Rigidity
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January 2010 |
Mammalian Genomic Imprinting
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May 2011 |
DNA methylation profiles of human active and inactive X chromosomes
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August 2011 |
DNA methylation and human disease
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August 2005 |
DNA Methylation in Cancer and Aging
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June 2016 |
Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis
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September 2006 |
Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
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January 2012 |
Dynamic changes in the human methylome during differentiation
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February 2010 |
Intragenic DNA methylation prevents spurious transcription initiation
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February 2017 |
DNA methylation and methyl-CpG binding proteins: developmental requirements and function
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June 2009 |
Identification and Characterization of a Family of Mammalian Methyl-CpG Binding Proteins
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November 1998 |
A Family of Human Zinc Finger Proteins That Bind Methylated DNA and Repress Transcription
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January 2006 |
Methyl-CpG binding proteins: specialized transcriptional repressors or structural components of chromatin?
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February 2008 |
Evolving insights on how cytosine methylation affects protein-DNA binding
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October 2014 |
The p120 catenin partner Kaiso is a DNA methylation-dependent transcriptional repressor
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July 2001 |
CpG methylation of half-CRE sequences creates C/EBP binding sites that activate some tissue-specific genes
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November 2010 |
In Embryonic Stem Cells, ZFP57/KAP1 Recognize a Methylated Hexanucleotide to Affect Chromatin and DNA Methylation of Imprinting Control Regions
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November 2011 |
Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence
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September 2014 |
Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA
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June 2017 |
DNA methylation presents distinct binding sites for human transcription factors
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September 2013 |
Dynamic Readers for 5-(Hydroxy)Methylcytosine and Its Oxidized Derivatives
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February 2013 |
CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo
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April 2013 |
The p120ctn-binding partner Kaiso is a bi-modal DNA-binding protein that recognizes both a sequence-specific consensus and methylated CpG dinucleotides
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July 2002 |
The role of DNA shape in protein–DNA recognition
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October 2009 |
Origins of Specificity in Protein-DNA Recognition
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June 2010 |
Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs
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April 2010 |
Many paths to one goal? The proteins that recognize methylated DNA in eukaryotes
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January 2009 |
A common mode of recognition for methylated CpG
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April 2013 |
Structural basis for Klf4 recognition of methylated DNA
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February 2014 |
An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence
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October 2012 |
CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso
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March 2018 |
Kaiso uses all three zinc fingers and adjacent sequence motifs for high affinity binding to sequence-specific and methyl-CpG DNA targets
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January 2012 |
C-C-A-G-G-C-m5C-T-G-G. Helical fine structure, hydration, and comparison with C-C-A-G-G-C-C-T-G-G.
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April 1992 |
Structural and Functional Dynamics of Human Centromeric Chromatin
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September 2006 |
Backbone Dynamics in the DNA Hha I Protein Binding Site
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June 2008 |
Furanose Dynamics in the Hha I Methyltransferase Target DNA Studied by Solution and Solid-State NMR Relaxation
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October 2008 |
31 P NMR Investigation of Backbone Dynamics in DNA Binding Sites
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August 2008 |
Probing Sequence-Specific DNA Flexibility in A-Tracts and Pyrimidine-Purine Steps by Nuclear Magnetic Resonance 13 C Relaxation and Molecular Dynamics Simulations
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October 2012 |
Cytosine ribose flexibility in DNA: a combined NMR 13C spin relaxation and molecular dynamics simulation study
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June 2008 |
Sequence-dependent DNA structure: dinucleotide conformational maps
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January 2000 |
Sequence-dependent DNA structure: tetranucleotide conformational maps
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January 2000 |
Sequence-dependent DNA Structure: A Database of Octamer Structural Parameters
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October 2003 |
Stereochemical basis of DNA bending by transcription factors
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January 1995 |
DNA bending: the prevalence of kinkiness and the virtues of normality
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April 1998 |
Helix bending as a factor in protein/DNA recognition
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January 1997 |
A genomic code for nucleosome positioning
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July 2006 |
A high-resolution atlas of nucleosome occupancy in yeast
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September 2007 |
Dynamic Impact of Methylation at the M. Hha I Target Site: A Solid-State Deuterium NMR Study
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September 2001 |
Impact of CpG methylation on structure, dynamics and solvation of cAMP DNA responsive element
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June 2001 |
Bending and flexibility of methylated and unmethylated EcoRI DNA
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February 2002 |
Nanoelectromechanics of Methylated DNA in a Synthetic Nanopore
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February 2009 |
Impact of Methylation on the Physical Properties of DNA
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May 2012 |
A sequence environment modulates the impact of methylation on the torsional rigidity of DNA
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January 2018 |
Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability
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February 2016 |
Nucleosomes protect DNA from DNA methylation in vivo and in vitro
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May 2011 |
The Catenin p120 ctn Interacts with Kaiso, a Novel BTB/POZ Domain Zinc Finger Transcription Factor
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May 1999 |
Kaiso/p120-Catenin and TCF/β-Catenin Complexes Coordinately Regulate Canonical Wnt Gene Targets
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June 2005 |
The catenin p120ctn inhibits Kaiso-mediated transcriptional repression of the β-catenin/TCF target gene matrilysin
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May 2005 |
p120 and Kaiso Regulate Helicobacter pylori -induced Expression of Matrix Metalloproteinase-7
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October 2008 |
Kaiso Represses the Cell Cycle Gene cyclin D1 via Sequence-Specific and Methyl-CpG-Dependent Mechanisms
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November 2012 |
Methylation-dependent regulation of hypoxia inducible factor-1 alpha gene expression by the transcription factor Kaiso
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December 2015 |
Kaiso, a transcriptional repressor, promotes cell migration and invasion of prostate cancer cells through regulation of miR-31 expression
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December 2015 |
N-CoR Mediates DNA Methylation-Dependent Repression through a Methyl CpG Binding Protein Kaiso
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September 2003 |
Integrative Genomics Identifies the Corepressor SMRT as a Gatekeeper of Adipogenesis through the Transcription Factors C/EBPβ and KAISO
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May 2012 |
Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso
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September 2012 |
Sequence-specific recognition of methylated DNA by human zinc-finger proteins
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April 2010 |
[20] Processing of X-ray diffraction data collected in oscillation mode
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January 1997 |
Phaser crystallographic software
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July 2007 |
Features and development of Coot
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March 2010 |
PHENIX: a comprehensive Python-based system for macromolecular structure solution
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January 2010 |
Web 3DNA 2.0 for the analysis, visualization, and modeling of 3D nucleic acid structures
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May 2019 |
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
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November 1995 |
Off-Resonance R 1ρ NMR Studies of Exchange Dynamics in Proteins with Low Spin-Lock Fields: An Application to a Fyn SH3 Domain
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December 2004 |
Extending the Range of Microsecond-to-Millisecond Chemical Exchange Detected in Labeled and Unlabeled Nucleic Acids by Selective Carbon R 1ρ NMR Spectroscopy
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February 2009 |
R1ρ relaxation for two-site chemical exchange: General approximations and some exact solutions
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December 2005 |
pH-dependent random coil 1H, 13C, and 15N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements
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September 2014 |
Fast evaluation of protein dynamics from deficient 15N relaxation data
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March 2018 |
An Off-resonance Rotating Frame Relaxation Experiment for the Investigation of Macromolecular Dynamics Using Adiabatic Rotations
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April 1998 |
NMR R 1 ρ Rotating-Frame Relaxation with Weak Radio Frequency Fields
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January 2004 |
Site-Specific Protonation Kinetics of Acidic Side Chains in Proteins Determined by pH-Dependent Carboxyl 13 C NMR Relaxation
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February 2015 |
Active-Site Glu165 Activation in Triosephosphate Isomerase and Its Deprotonation Kinetics
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April 2019 |
How Do Hydrogen Bonds Contribute to Protein-DNA Recognition?
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January 2000 |
How methyl–sugar interactions determine DNA structure and flexibility
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December 2018 |
Sequence-Dependent Dynamics of Duplex DNA: The Applicability of a Dinucleotide Model
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December 2002 |
Transient Hoogsteen base pairs in canonical duplex DNA
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January 2011 |
Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics
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September 2014 |
Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding
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February 2018 |
Effect of Methylation on Local Mechanics and Hydration Structure of DNA
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April 2018 |
Probing DNA shape and methylation state on a genomic scale with DNase I
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April 2013 |