Substrate heterogeneity and microfauna in soil organic ‘hotspots’ as determinants of nitrogen capture and growth of ryegrass
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journal
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February 2000 |
Stable-isotope probing as a tool in microbial ecology
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journal
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February 2000 |
Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
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journal
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March 2018 |
Microclimate within litter bags of different mesh size: Implications for the ‘arthropod effect’ on litter decomposition
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journal
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March 2013 |
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
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journal
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January 2009 |
Active and total microbial communities in forest soil are largely different and highly stratified during decomposition
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journal
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July 2011 |
Trimmomatic: a flexible trimmer for Illumina sequence data
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journal
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April 2014 |
High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use
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journal
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December 2011 |
Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays
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journal
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February 2006 |
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
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journal
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June 2007 |
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
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journal
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May 2011 |
Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition
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journal
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December 2000 |
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
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November 2012 |
Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
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January 2012 |
Bacterial populations assimilating carbon from 13C-labeled plant residue in soil: Analysis by a DNA-SIP approach
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April 2011 |
Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data
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March 2020 |
A genome Tree of Life for the Fungi kingdom
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August 2017 |
Biodiversity and Litter Decomposition in Terrestrial Ecosystems
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journal
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December 2005 |
Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons
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journal
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August 2015 |
Evidence for the primacy of living root inputs, not root or shoot litter, in forming soil organic carbon
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journal
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August 2018 |
ARB: a software environment for sequence data
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journal
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February 2004 |
Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass
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journal
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May 2016 |
Parsing ecological signal from noise in next generation amplicon sequencing
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journal
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July 2014 |
Linking invertebrate communities to decomposition rate and nitrogen availability in pine forest soils
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journal
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March 2012 |
Metatranscriptomic census of active protists in soils
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journal
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March 2015 |
Soil protistology rebooted: 30 fundamental questions to start with
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journal
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August 2017 |
Ecology of ligninolytic fungi associated with leaf litter decomposition
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journal
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June 2007 |
QIIME allows analysis of high-throughput community sequencing data
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journal
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April 2010 |
Energetics, Patterns of Interaction Strengths, and Stability in Real Ecosystems
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journal
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September 1995 |
Isolation of ‘ Candidatus Nitrosocosmicus franklandus’, a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration
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journal
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March 2016 |
Who eats what, where and when? Isotope-labelling experiments are coming of age
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journal
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May 2007 |
Taxon-specific C/N relative use efficiency for amino acids in an estuarine community
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journal
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September 2012 |
Seasonal Changes in Free-Living Amoeba Species in the Root Canopy of Zygophyllum dumosum in the Negev Desert, Israel
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journal
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January 2005 |
The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists
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journal
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October 2005 |
Competitive Exclusion and Metabolic Dependency among Microorganisms Structure the Cellulose Economy of an Agricultural Soil
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journal
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February 2021 |
Terrestrial biogeochemical cycles: Global estimates with remote sensing
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journal
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January 1995 |
Macro-invertebrates accelerate litter decomposition and nutrient release in a Hawaiian rainforest
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journal
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January 2011 |
Input control of organic matter dynamics
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September 1997 |
The origin of litter chemical complexity during decomposition
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journal
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August 2012 |
Closely related protist strains have different grazing impacts on natural bacterial communities: Protist grazing of bacterial communities
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journal
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December 2010 |
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
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journal
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December 2005 |
The Functional Significance of Bacterial Predators
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journal
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April 2021 |
Mapping of Sugar and Amino Acid Availability in Soil around Roots with Bacterial Sensors of Sucrose and Tryptophan
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journal
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January 1999 |
UCHIME improves sensitivity and speed of chimera detection
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journal
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June 2011 |
Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi
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journal
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May 2015 |
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes
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journal
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October 2017 |
The Ecology of Soil Carbon: Pools, Vulnerabilities, and Biotic and Abiotic Controls
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journal
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November 2017 |
Seasonal Dynamics of Microbial Community Composition and Function in Oak Canopy and Open Grassland Soils
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journal
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August 2006 |
Resource allocation to extracellular enzyme production: A model for nitrogen and phosphorus control of litter decomposition
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journal
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October 1994 |
Interactions of bacteria, protozoa and plants leading to mineralization of soil nitrogen
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journal
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January 1985 |
The soil food web revisited: Diverse and widespread mycophagous soil protists
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journal
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March 2016 |
Disentangling carbon flow across microbial kingdoms in the rhizosphere of maize
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journal
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July 2019 |
Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome
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journal
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June 2008 |
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
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journal
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October 2018 |
Selective progressive response of soil microbial community to wild oat roots
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journal
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November 2008 |
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
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journal
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December 2011 |
Protists: Puppet Masters of the Rhizosphere Microbiome
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journal
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February 2019 |
Reconstructing 16S rRNA genes in metagenomic data
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journal
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June 2015 |
Large-scale 16S gene assembly using metagenomics shotgun sequences
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journal
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January 2017 |
The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?
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journal
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February 2013 |
Resistance, resilience, and redundancy in microbial communities
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journal
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August 2008 |
Estimation of 18S Gene Copy Number in Marine Eukaryotic Plankton Using a Next-Generation Sequencing Approach
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journal
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April 2019 |
Soil fauna alter the effects of litter composition on nitrogen cycling in a mineral soil
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journal
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July 2011 |
Towards PacBio‐based pan‐eukaryote metabarcoding using full‐length ITS sequences
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journal
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July 2019 |
Persistence of soil organic matter as an ecosystem property
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journal
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October 2011 |
Regulation of the Synthesis of Ribosomes and Ribosomal Components
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journal
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June 1984 |
Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition
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journal
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August 2016 |
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
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journal
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January 2010 |
Microbial-feeding nematodes and protozoa in soil: Their effectson microbial activity and nitrogen mineralization in decomposition hotspots and the rhizosphere
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journal
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July 1994 |
UPARSE: highly accurate OTU sequences from microbial amplicon reads
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journal
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August 2013 |
Rhizosphere carbon flow in trees, in comparison with annual plants: the importance of root exudation and its impact on microbial activity and nutrient availability
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journal
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January 1997 |
‘David and Goliath’ of the soil food web – Flagellates that kill nematodes
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journal
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August 2008 |
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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journal
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November 2012 |
Amplification primers of SSU rDNA for soil protists
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journal
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February 2014 |
Experimental evidence for the interacting effects of forest edge, moisture and soil macrofauna on leaf litter decomposition
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journal
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June 2012 |
Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop
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journal
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April 2021 |
Soil protist communities form a dynamic hub in the soil microbiome
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journal
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October 2017 |
Chip-SIP: Stable Isotope Probing Analyzed with rRNA-Targeted Microarrays and NanoSIMS
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book
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January 2019 |
High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution
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journal
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July 2019 |
Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments
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journal
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February 2013 |
Total RNA sequencing reveals multilevel microbial community changes and functional responses to wood ash application in agricultural and forest soil
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journal
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February 2020 |
Fungal-feeding habits of six nematode isolates in the genus Filenchus
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journal
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June 2005 |
High-Throughput Sequencing: A Roadmap Toward Community Ecology
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journal
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March 2013 |
In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis
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journal
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January 2012 |
Global biogeography of highly diverse protistan communities in soil
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journal
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December 2012 |
Microbial control over carbon cycling in soil
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journal
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January 2012 |
Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance
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journal
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October 2012 |
RNA Stable Isotope Probing, a Novel Means of Linking Microbial Community Function to Phylogeny
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journal
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November 2002 |
Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing
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journal
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January 2012 |
Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana
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journal
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February 2009 |
Identification of cellulolytic bacteria in soil by stable isotope probing
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journal
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March 2007 |
Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil
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journal
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May 2016 |
Plant- or microbial-derived? A review on the molecular composition of stabilized soil organic matter
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journal
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May 2021 |
Small but active - pool size does not matter for carbon incorporation in below-ground food webs
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journal
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August 2015 |
Laboratory growth rates of six species of freshwater Gymnamoebia
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journal
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January 1980 |