Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex

Journal Article · · Genes & Development
 [1];  [2];  [3];  [4];  [4];  [1];  [4];  [4];  [4];  [4];  [5];  [5];  [2];  [4]
  1. Inst. of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna (Austria); Doctoral School at the Univ. of Vienna and Medical Univ. of Vienna (Austria)
  2. Memorial Sloan Kettering Cancer Center, New York, NY (United States)
  3. Inst. of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna (Austria); Research Inst. of Molecular Pathology (IMP), Vienna (Austria)
  4. Inst. of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna (Austria)
  5. Research Inst. of Molecular Pathology (IMP), Vienna (Austria)
Nuclear Argonaute proteins, guided by their bound small RNAs to nascent target transcripts, mediate cotranscriptional silencing of transposons and repetitive genomic loci through heterochromatin formation. The molecular mechanisms involved in this process are incompletely understood. Here, we show that the SFiNX complex, a silencing mediator downstream from nuclear Piwi-piRNA complexes in Drosophila, facilitates cotranscriptional silencing as a homodimer. The dynein light chain protein Cut up/LC8 mediates SFiNX dimerization, and its function can be bypassed by a heterologous dimerization domain, arguing for a constitutive SFiNX dimer. Dimeric, but not monomeric SFiNX, is capable of forming molecular condensates in a nucleic acid-stimulated manner. Mutations that prevent SFiNX dimerization result in loss of condensate formation in vitro and the inability of Piwi to initiate heterochromatin formation and silence transposons in vivo. We propose that multivalent SFiNX-nucleic acid interactions are critical for heterochromatin establishment at piRNA target loci in a cotranscriptional manner.
Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
NIH; USDOE; USDOE Office of Science (SC)
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1829866
Alternate ID(s):
OSTI ID: 1834935
Journal Information:
Genes & Development, Journal Name: Genes & Development Journal Issue: 5-6 Vol. 35; ISSN 0890-9369
Publisher:
Cold Springs Harbor Laboratory PressCopyright Statement
Country of Publication:
United States
Language:
ENGLISH

References (72)

Structural basis of diverse sequence-dependent target recognition by the 8 kDa dynein light chain11Edited by P. E. Wright journal February 2001
Phase-separation in chromatin organization journal January 2020
Identification of human Asf1 chromatin assembly factors as substrates of Tousled-like kinases journal July 2001
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila journal March 2007
Transcriptional Silencing of Transposons by Piwi and Maelstrom and Its Impact on Chromatin State and Gene Expression journal November 2012
Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates journal January 2019
Organization of Chromatin by Intrinsic and Regulated Phase Separation journal October 2019
RNAi-dependent formation of heterochromatin and its diverse functions journal April 2010
An Alpha Motif at Tas3 C Terminus Mediates RITS cis Spreading and Promotes Heterochromatic Gene Silencing journal April 2009
Piwi Modulates Chromatin Accessibility by Regulating Multiple Factors Including Histone H1 to Repress Transposons journal August 2016
Su(var)2-10 and the SUMO Pathway Link piRNA-Guided Target Recognition to Chromatin Silencing journal February 2020
The piRNA pathway: a fly's perspective on the guardian of the genome journal December 2010
The Role of KRAB-ZFPs in Transposable Element Repression and Mammalian Evolution journal November 2017
Interactions of Cytoplasmic Dynein Light Chains Tctex-1 and LC8 with the Intermediate Chain IC74 journal March 2002
Dynein Light Chain LC8 Promotes Assembly of the Coiled-Coil Domain of Swallow Protein journal March 2004
Structural Features of LC8-Induced Self-Association of Swallow journal August 2013
Dynein Light Chain LC8 Is a Dimerization Hub Essential in Diverse Protein Networks journal December 2007
A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila journal October 2009
dDsk2 regulates H2Bub1 and RNA polymerase II pausing at dHP1c complex target genes journal April 2015
Transposable elements and the epigenetic regulation of the genome journal April 2007
Small silencing RNAs: an expanding universe journal February 2009
RNA-mediated epigenetic regulation of gene expression journal January 2015
Ten principles of heterochromatin formation and function journal December 2017
PIWI-interacting small RNAs: the vanguard of genome defence journal March 2011
The Mi-2 nucleosome remodeler and the Rpd3 histone deacetylase are involved in piRNA-guided heterochromatin formation journal June 2020
A Pandas complex adapted for piRNA-guided transcriptional silencing and heterochromatin formation journal September 2019
lncRNA DIGIT and BRD3 protein form phase-separated condensates to regulate endoderm differentiation journal September 2020
PIWI-interacting RNAs: small RNAs with big functions journal November 2018
Phase separation drives X-chromosome inactivation: a hypothesis journal May 2019
The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation journal August 2019
Establishment of stable cell lines of Drosophila germ-line stem cells journal October 2006
Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line journal December 2011
The 8-kDa Dynein Light Chain Binds to Its Targets via a Conserved (K/R) X TQT Motif journal January 2001
Structural Analysis of the Regulation of the DYNLL/LC8 Binding to Nek9 by Phosphorylation journal April 2013
FlyBase 2.0: the next generation journal October 2018
RNAi and Heterochromatin Assembly journal August 2015
Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome journal August 2006
Multiple roles for Piwi in silencing Drosophila transposons journal February 2013
Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state journal February 2013
Silencio/CG9754 connects the Piwi–piRNA complex to the cellular heterochromatin machinery journal October 2015
The RNA-induced transcriptional silencing complex targets chromatin exclusively via interacting with nascent transcripts journal December 2016
Drosophila HP1c isoform interacts with the zinc-finger proteins WOC and Relative-of-WOC to regulate gene expression journal November 2008
PHENIX : building new software for automated crystallographic structure determination journal October 2002
Integration, scaling, space-group assignment and post-refinement journal January 2010
Features and development of Coot journal March 2010
iMOSFLM : a new graphical interface for diffraction-image processing with MOSFLM journal March 2011
DYNLL/LC8: a light chain subunit of the dynein motor complex and beyond: DYNLL/LC8 dynein light chain journal August 2011
Regulated nuclear accumulation of a histone methyltransferase times the onset of heterochromatin formation in C. elegans embryos journal August 2018
RNAi-Mediated Targeting of Heterochromatin by the RITS Complex journal January 2004
The Piwi-piRNA Pathway Provides an Adaptive Defense in the Transposon Arms Race journal November 2007
X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil journal October 1991
Transposable Elements, Epigenetics, and Genome Evolution journal November 2012
Panoramix enforces piRNA-dependent cotranscriptional silencing journal October 2015
Cytoplasmic dynein (ddlc1) mutations cause morphogenetic defects and apoptotic cell death in Drosophila melanogaster journal May 1996
Heterochromatin: Guardian of the Genome journal October 2018
piRNA-Guided Genome Defense: From Biogenesis to Silencing journal November 2018
Mutations in the 8 kDa dynein light chain gene disrupt sensory axon projections in the Drosophila imaginal CNS journal October 1996
piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells journal February 2000
Egalitarian binding partners, Dynein light chain and bicaudal-D, act sequentially to link mRNA to the Dynein motor journal January 2019
The capacity of target silencing by Drosophila PIWI and piRNAs journal October 2014
Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway journal December 2017
Genetic Analysis of the Cytoplasmic Dynein Subunit Families journal January 2006
Windei, the Drosophila Homolog of mAM/MCAF1, Is an Essential Cofactor of the H3K9 Methyl Transferase dSETDB1/Eggless in Germ Line Development journal September 2009
Directed Evolution Reveals the Binding Motif Preference of the LC8/DYNLL Hub Protein and Predicts Large Numbers of Novel Binders in the Human Proteome journal April 2011
The binding of Chp2’s chromodomain to methylated H3K9 is essential for Chp2’s role in heterochromatin assembly in fission yeast journal August 2018
Nuclear RNA export factor variant initiates piRNA‐guided co‐transcriptional silencing journal July 2019
Essential roles of Windei and nuclear monoubiquitination of Eggless/ SETDB 1 in transposon silencing journal October 2019
Efficient CRISPR/Cas9 Plasmids for Rapid and Versatile Genome Editing in Drosophila journal September 2014
Systematic identification of recognition motifs for the hub protein LC8 journal July 2019
Improved CUT&RUN chromatin profiling tools journal June 2019
piRNA-guided co-transcriptional silencing coopts nuclear export factors journal June 2019
Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila journal February 2021

Similar Records

The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation
Journal Article · Sun Aug 04 20:00:00 EDT 2019 · Nature Structural & Molecular Biology · OSTI ID:1561310

Structural Basis for piRNA 2-O-methylated 3-end Recognition by Piwi PAZ (Piwi/Argonaute/Awille) Domains
Journal Article · Fri Dec 30 23:00:00 EST 2011 · Proceedings of the National Academy of Sciences of the United States of America · OSTI ID:1041665