Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring

Fernandes-Martins, Maria C.; Keller, Lisa M.; Munro-Ehrlich, Mason; Zimlich, Kathryn R.; Mettler, Madelyn K.; England, Alexis M.; Clare, Rita; Surya, Kevin; Shock, Everett L.; Colman, Daniel R.; Boyd, Eric S.; Semrau, ed., Jeremy D.

doi:10.1128/AEM.01598-21

Title: Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring

Journal Article · Wed Nov 10 00:00:00 EST 2021 · Applied and Environmental Microbiology

DOI:https://doi.org/10.1128/AEM.01598-21· OSTI ID:1829762

Fernandes-Martins, Maria C. ^[1]; Keller, Lisa M. ^[1]; Munro-Ehrlich, Mason ^[1]; Zimlich, Kathryn R. ^[1]; Mettler, Madelyn K. ^[2]; England, Alexis M. ^[1]; Clare, Rita ^[3]; Surya, Kevin ^[1]; Shock, Everett L. ^[4]; Colman, Daniel R. ^[1];

^[1]; Semrau, ed., Jeremy D.

Department of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, USA
Department of Chemical and Biological Engineering, Montana State University, Bozeman, Montana, USA
Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA
School of Molecular Sciences, Arizona State University, Tempe, Arizona, USA, School of Earth and Space Exploration, Arizona State University, Tempe, Arizona, USA

Little is known of how the confluence of subsurface and surface processes influences the assembly and habitability of hydrothermal ecosystems. To address this knowledge gap, the geochemical and microbial composition of a high-temperature, circumneutral hot spring in Yellowstone National Park was examined to identify the sources of solutes and their effect on the ecology of microbial inhabitants. Metagenomic analysis showed that populations comprising planktonic and sediment communities are archaeal dominated, are dependent on chemical energy (chemosynthetic), share little overlap in their taxonomic composition, and are differentiated by their inferred use of/tolerance to oxygen and mode of carbon metabolism. The planktonic community is dominated by putative aerobic/aerotolerant autotrophs, while the taxonomic composition of the sediment community is more evenly distributed and comprised of anaerobic heterotrophs. These observations are interpreted to reflect sourcing of the spring by anoxic, organic carbon-limited subsurface hydrothermal fluids and ingassing of atmospheric oxygen that selects for aerobic/aerotolerant organisms that have autotrophic capabilities in the water column. Autotrophy and consumption of oxygen by the planktonic community may influence the assembly of the anaerobic and heterotrophic sediment community. Support for this inference comes from higher estimated rates of genome replication in planktonic populations than sediment populations, indicating faster growth in planktonic populations. Collectively, these observations provide new insight into how mixing of subsurface waters and atmospheric oxygen create dichotomy in the ecology of hot spring communities and suggest that planktonic and sediment communities may have been less differentiated taxonomically and functionally prior to the rise of oxygen at ~2.4 billion years ago (Gya).

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Research Organization:: USDOE Joint Genome Institute (JGI), Berkeley, CA (United States); Montana State Univ., Bozeman, MT (United States)

Sponsoring Organization:: USDOE; National Science Foundation (NSF)

Grant/Contract Number:: CSP 504081; AC02-05CH11231; EAR-1820658

OSTI ID:: 1829762

Alternate ID(s):: OSTI ID: 1904073

Journal Information:: Applied and Environmental Microbiology, Journal Name: Applied and Environmental Microbiology Vol. 87 Journal Issue: 23; ISSN 0099-2240

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (80)

DOE JGI Metagenome Workflow Clum, Alicia; Huntemann, Marcel; Bushnell, Brian mSystems, Vol. 6, Issue 3 https://doi.org/10.1128/mSystems.00804-20	journal	June 2021
Temporal variations of geyser water chemistry in the Upper Geyser Basin, Yellowstone National Park, USA: GEYSER WATER CHEMISTRY VARIATIONS Hurwitz, Shaul; Hunt, Andrew G.; Evans, William C. Geochemistry, Geophysics, Geosystems, Vol. 13, Issue 12 https://doi.org/10.1029/2012GC004388	journal	December 2012
Surface water–groundwater interaction and chemistry in a mineral-armored hydrothermal outflow channel, Yellowstone National Park, USA Vitale, M. V.; Gardner, P.; Hinman, N. W. Hydrogeology Journal, Vol. 16, Issue 7 https://doi.org/10.1007/s10040-008-0344-8	journal	August 2008
Early Evolution of Cytochrome bc Complexes Schütz, Michael; Brugna, Myriam; Lebrun, Evelyne Journal of Molecular Biology, Vol. 300, Issue 4 https://doi.org/10.1006/jmbi.2000.3915	journal	July 2000
The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem Inskeep, William Frontiers in Microbiology, Vol. 4 https://doi.org/10.3389/fmicb.2013.00067	journal	January 2013
Mixing of hydrothermal water and groundwater near hot springs, Yellowstone National Park (USA): hydrology and geochemistry Gibson, Matthew L.; Hinman, Nancy W. Hydrogeology Journal, Vol. 21, Issue 4 https://doi.org/10.1007/s10040-013-0965-4	journal	March 2013
Aeropyrum camini sp. nov., a strictly aerobic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney Nakagawa, Satoshi; Takai, Ken; Horikoshi, Koki International Journal of Systematic and Evolutionary Microbiology, Vol. 54, Issue 2 https://doi.org/10.1099/ijs.0.02826-0	journal	March 2004
The Intersection of Geology, Geochemistry, and Microbiology in Continental Hydrothermal Systems Colman, Daniel R.; Lindsay, Melody R.; Amenabar, Maximiliano J. Astrobiology, Vol. 19, Issue 12 https://doi.org/10.1089/ast.2018.2016	journal	December 2019
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea Bowers, Robert M.; Kyrpides, Nikos C.; Stepanauskas, Ramunas Nature Biotechnology, Vol. 35, Issue 8 https://doi.org/10.1038/nbt.3893	journal	August 2017
Earliest signs of life on land preserved in ca. 3.5 Ga hot spring deposits Djokic, Tara; Van Kranendonk, Martin J.; Campbell, Kathleen A. Nature Communications, Vol. 8, Issue 1 https://doi.org/10.1038/ncomms15263	journal	May 2017
Four chromosome replication origins in the archaeon Pyrobaculum calidifontis: Replication origins in P. calidifontis Pelve, Erik A.; Lindås, Ann-Christin; Knöppel, Anna Molecular Microbiology, Vol. 85, Issue 5 https://doi.org/10.1111/j.1365-2958.2012.08155.x	journal	July 2012
KAAS: an automatic genome annotation and pathway reconstruction server Moriya, Y.; Itoh, M.; Okuda, S. Nucleic Acids Research, Vol. 35, Issue S2, p. W182-W185 https://doi.org/10.1093/nar/gkm321	journal	May 2007
Geochemistry and Dynamics of the Yellowstone National Park Hydrothermal System Fournier, R. O. Annual Review of Earth and Planetary Sciences, Vol. 17, Issue 1 https://doi.org/10.1146/annurev.ea.17.050189.000305	journal	May 1989
Pyrobaculum calidifontis sp. nov., a novel hyperthermophilic archaeon that grows in atmospheric air Amo, Taku; Paje, Maria Luz F.; Inagaki, Akiko Archaea, Vol. 1, Issue 2 https://doi.org/10.1155/2002/616075	journal	January 2002
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys Walters, William; Hyde, Embriette R.; Berg-Lyons, Donna mSystems, Vol. 1, Issue 1 https://doi.org/10.1128/mSystems.00009-15	journal	December 2015
An evolving view of methane metabolism in the Archaea Evans, Paul N.; Boyd, Joel A.; Leu, Andy O. Nature Reviews Microbiology, Vol. 17, Issue 4 https://doi.org/10.1038/s41579-018-0136-7	journal	January 2019
Fast and accurate short read alignment with Burrows-Wheeler transform Li, H.; Durbin, R. Bioinformatics, Vol. 25, Issue 14 https://doi.org/10.1093/bioinformatics/btp324	journal	May 2009
Sulfur geochemistry of hydrothermal waters in Yellowstone National Park: IV Acid–sulfate waters Kirk Nordstrom, D.; Blaine McCleskey, R.; Ball, James W. Applied Geochemistry, Vol. 24, Issue 2 https://doi.org/10.1016/j.apgeochem.2008.11.019	journal	February 2009
Pyrobaculum yellowstonensis Strain WP30 Respires on Elemental Sulfur and/or Arsenate in Circumneutral Sulfidic Geothermal Sediments of Yellowstone National Park Jay, Z. J.; Beam, J. P.; Dohnalkova, A. Applied and Environmental Microbiology, Vol. 81, Issue 17 https://doi.org/10.1128/AEM.01095-15	journal	June 2015
KEGG: Kyoto Encyclopedia of Genes and Genomes Kanehisa, Minoru; Goto, Susumu Nucleic Acids Research, Vol. 28, Issue 1, p. 27-30 https://doi.org/10.1093/nar/28.1.27	journal	January 2000
Stable isotope labeling confirms mixotrophic nature of streamer biofilm communities at alkaline hot springs Schubotz, Florence; Hays, Lindsay E.; Meyer-Dombard, D'Arcy R. Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.00042	journal	February 2015
Mutational bias suggests that replication termination occurs near the dif site, not at Ter sites: Replication termination occurs near the dif site Hendrickson, Heather; Lawrence, Jeffrey G. Molecular Microbiology, Vol. 64, Issue 1 https://doi.org/10.1111/j.1365-2958.2007.05596.x	journal	January 2007
Arsenic and antimony in geothermal waters of Yellowstone National Park, Wyoming, USA Stauffer, Robert E.; Thompson, John M. Geochimica et Cosmochimica Acta, Vol. 48, Issue 12 https://doi.org/10.1016/0016-7037(84)90305-3	journal	December 1984
Spatial and temporal variability of biomarkers and microbial diversity reveal metabolic and community flexibility in Streamer Biofilm Communities in the Lower Geyser Basin, Yellowstone National Park Schubotz, F.; Meyer-Dombard, D. R.; Bradley, A. S. Geobiology https://doi.org/10.1111/gbi.12051	journal	August 2013
Dynamics of the Yellowstone hydrothermal system: YELLOWSTONE HYDROTHERMAL SYSTEM Hurwitz, Shaul; Lowenstern, Jacob B. Reviews of Geophysics, Vol. 52, Issue 3 https://doi.org/10.1002/2014RG000452	journal	August 2014
A novel PARAFAC model for continental hot springs reveals unique dissolved organic carbon compositions Nye, Joshua J.; Shock, Everett L.; Hartnett, Hilairy E. Organic Geochemistry, Vol. 141 https://doi.org/10.1016/j.orggeochem.2019.103964	journal	March 2020
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample Caporaso, J. G.; Lauber, C. L.; Walters, W. A. Proceedings of the National Academy of Sciences, Vol. 108, Issue Supplement_1 https://doi.org/10.1073/pnas.1000080107	journal	June 2010
Prediction of oxygen solubility in pure water and brines up to high temperatures and pressures Geng, Ming; Duan, Zhenhao Geochimica et Cosmochimica Acta, Vol. 74, Issue 19 https://doi.org/10.1016/j.gca.2010.06.034	journal	October 2010
Autotrophic carbon fixation in archaea Berg, Ivan A.; Kockelkorn, Daniel; Ramos-Vera, W. Hugo Nature Reviews Microbiology, Vol. 8, Issue 6, p. 447-460 https://doi.org/10.1038/nrmicro2365	journal	May 2010
The cytochrome bd respiratory oxygen reductases Borisov, Vitaliy B.; Gennis, Robert B.; Hemp, James Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1807, Issue 11 https://doi.org/10.1016/j.bbabio.2011.06.016	journal	November 2011
Role of 4-Hydroxybutyrate-CoA Synthetase in the CO2 Fixation Cycle in Thermoacidophilic Archaea Hawkins, Aaron S.; Han, Yejun; Bennett, Robert K. Journal of Biological Chemistry, Vol. 288, Issue 6 https://doi.org/10.1074/jbc.M112.413195	journal	February 2013
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets Wu, Yu-Wei; Simmons, Blake A.; Singer, Steven W. Bioinformatics, Vol. 32, Issue 4 https://doi.org/10.1093/bioinformatics/btv638	journal	October 2015
Quantifying inorganic sources of geochemical energy in hydrothermal ecosystems, Yellowstone National Park, USA Shock, Everett L.; Holland, Melanie; Meyer-Dombard, D’Arcy Geochimica et Cosmochimica Acta, Vol. 74, Issue 14 https://doi.org/10.1016/j.gca.2009.08.036	journal	July 2010
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T. Genome Research, Vol. 25, Issue 7 https://doi.org/10.1101/gr.186072.114	journal	May 2015
Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages Takacs-Vesbach, Cristina; Inskeep, William P.; Jay, Zackary J. Frontiers in Microbiology, Vol. 4 https://doi.org/10.3389/fmicb.2013.00084	journal	January 2013
MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis Uritskiy, Gherman V.; DiRuggiero, Jocelyne; Taylor, James Microbiome, Vol. 6, Issue 1 https://doi.org/10.1186/s40168-018-0541-1	journal	September 2018
A multitracer approach for characterizing interactions between shallow groundwater and the hydrothermal system in the Norris Geyser Basin area, Yellowstone National Park: GROUNDWATER FLOW AROUND NORRIS Gardner, W. Payton; Susong, David D.; Solomon, D. Kip Geochemistry, Geophysics, Geosystems, Vol. 12, Issue 8 https://doi.org/10.1029/2010GC003353	journal	August 2011
Hydrothermal ecotones and streamer biofilm communities in the Lower Geyser Basin, Yellowstone National Park: Hydrothermal ecotones and biofilms in Yellowstone Meyer-Dombard, D'Arcy R.; Swingley, Wesley; Raymond, Jason Environmental Microbiology, Vol. 13, Issue 8 https://doi.org/10.1111/j.1462-2920.2011.02476.x	journal	March 2011
Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities Cole, Jessica K.; Peacock, Joseph P.; Dodsworth, Jeremy A. The ISME Journal, Vol. 7, Issue 4 https://doi.org/10.1038/ismej.2012.157	journal	December 2012
The complete genome of the hyperthermophilic bacterium Aquifex aeolicus Deckert, Gerard; Warren, Patrick V.; Gaasterland, Terry Nature, Vol. 392, Issue 6674 https://doi.org/10.1038/32831	journal	March 1998
Arsenic geochemistry in geothermal systems Ballantyne, Judith M.; Moore, Joseph N. Geochimica et Cosmochimica Acta, Vol. 52, Issue 2 https://doi.org/10.1016/0016-7037(88)90102-0	journal	February 1988
The Hot Spring Hypothesis for an Origin of Life Damer, Bruce; Deamer, David Astrobiology, Vol. 20, Issue 4 https://doi.org/10.1089/ast.2019.2045	journal	April 2020
Pyrobaculum oguniense sp. nov., a novel facultatively aerobic and hyperthermophilic archaeon growing at up to 97 degrees C. Sako, Y.; Nunoura, T.; Uchida, A. International Journal of Systematic and Evolutionary Microbiology, Vol. 51, Issue 2 https://doi.org/10.1099/00207713-51-2-303	journal	March 2001
Regulated Polyploidy in Halophilic Archaea Breuert, Sebastian; Allers, Thorsten; Spohn, Gabi PLoS ONE, Vol. 1, Issue 1 https://doi.org/10.1371/journal.pone.0000092	journal	December 2006
Where does bacterial replication start? Rules for predicting the oriC region Mackiewicz, P. Nucleic Acids Research, Vol. 32, Issue 13 https://doi.org/10.1093/nar/gkh699	journal	July 2004
Water-chemistry data for selected springs, geysers, and streams in Yellowstone National Park Wyoming, 2001-2002 McCleskey, R. Blaine; Ball, James W.; Nordstrom, D. Kirk https://doi.org/10.3133/ofr20041316	report	January 2005
Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees Webb, Campbell O. The American Naturalist, Vol. 156, Issue 2 https://doi.org/10.1086/303378	journal	August 2000
The rise of oxygen in Earth’s early ocean and atmosphere Lyons, Timothy W.; Reinhard, Christopher T.; Planavsky, Noah J. Nature, Vol. 506, Issue 7488 https://doi.org/10.1038/nature13068	journal	February 2014
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database Chaumeil, Pierre-Alain; Mussig, Aaron J.; Hugenholtz, Philip Bioinformatics https://doi.org/10.1093/bioinformatics/btz848	journal	November 2019
Reduction and Morphological Transformation of Synthetic Nanophase Iron Oxide Minerals by Hyperthermophilic Archaea Kashyap, Srishti; Sklute, Elizabeth C.; Dyar, M. Darby Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.01550	journal	July 2018
Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean Hügler, Michael; Sievert, Stefan M. Annual Review of Marine Science, Vol. 3, Issue 1, p. 261-289 https://doi.org/10.1146/annurev-marine-120709-142712	journal	January 2011
Binning metagenomic contigs by coverage and composition Alneberg, Johannes; Bjarnason, Brynjar Smári; de Bruijn, Ino Nature Methods, Vol. 11, Issue 11 https://doi.org/10.1038/nmeth.3103	journal	September 2014
The bacterial species definition in the genomic era Konstantinidis, Konstantinos T.; Ramette, Alban; Tiedje, James M. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 361, Issue 1475 https://doi.org/10.1098/rstb.2006.1920	journal	October 2006
Energetics of overall metabolic reactions of thermophilic and hyperthermophilic Archaea and Bacteria Amend, Jan P.; Shock, Everett L. FEMS Microbiology Reviews, Vol. 25, Issue 2 https://doi.org/10.1111/j.1574-6976.2001.tb00576.x	journal	April 2001
Electron acceptor availability alters carbon and energy metabolism in a thermoacidophile Amenabar, Maximiliano J.; Colman, Daniel R.; Poudel, Saroj Environmental Microbiology, Vol. 20, Issue 7 https://doi.org/10.1111/1462-2920.14270	journal	July 2018
Microbe-Mineral Interaction and Novel Proteins for Iron Oxide Mineral Reduction in the Hyperthermophilic Crenarchaeon Pyrodictium delaneyi Kashyap, Srishti; Holden, James F. Applied and Environmental Microbiology, Vol. 87, Issue 6 https://doi.org/10.1128/AEM.02330-20	journal	February 2021
DNA replication origins in archaea Wu, Zhenfang; Liu, Jingfang; Yang, Haibo Frontiers in Microbiology, Vol. 5 https://doi.org/10.3389/fmicb.2014.00179	journal	April 2014
Greater temporal changes of sediment microbial community than its waterborne counterpart in Tengchong hot springs, Yunnan Province, China Wang, Shang; Dong, Hailiang; Hou, Weiguo Scientific Reports, Vol. 4, Issue 1 https://doi.org/10.1038/srep07479	journal	December 2014
Phylogenetic prediction of the maximum per capita rate of population growth Fagan, William F.; Pearson, Yanthe E.; Larsen, Elise A. Proceedings of the Royal Society B: Biological Sciences, Vol. 280, Issue 1763 https://doi.org/10.1098/rspb.2013.0523	journal	July 2013
Automated quantitative and isotopic (13C) analysis of dissolved inorganic carbon and dissolved organic carbon in continuous-flow using a total organic carbon analyser St-Jean, Gilles Rapid Communications in Mass Spectrometry, Vol. 17, Issue 5 https://doi.org/10.1002/rcm.926	journal	January 2003
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks Shannon, P. Genome Research, Vol. 13, Issue 11 https://doi.org/10.1101/gr.1239303	journal	November 2003
Merging isotopes and community genomics in a siliceous sinter-depositing hot spring Havig, Jeff R.; Raymond, Jason; Meyer-Dombard, D'Arcy R. Journal of Geophysical Research, Vol. 116, Issue G1 https://doi.org/10.1029/2010JG001415	journal	January 2011
Basic local alignment search tool Altschul, Stephen F.; Gish, Warren; Miller, Webb Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410 https://doi.org/10.1016/S0022-2836(05)80360-2	journal	October 1990
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries Jain, Chirag; Rodriguez-R, Luis M.; Phillippy, Adam M. Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-07641-9	journal	November 2018
The transition to microbial photosynthesis in hot spring ecosystems Cox, Alysia; Shock, Everett L.; Havig, Jeff R. Chemical Geology, Vol. 280, Issue 3-4 https://doi.org/10.1016/j.chemgeo.2010.11.022	journal	January 2011
Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA Meyer-Dombard, D. R.; Shock, E. L.; Amend, J. P. Geobiology, Vol. 3, Issue 3 https://doi.org/10.1111/j.1472-4669.2005.00052.x	journal	July 2005
Seasonal hydrologic and geologic forcing drive hot spring geochemistry and microbial biodiversity Colman, Daniel R.; Lindsay, Melody R.; Harnish, Annette Environmental Microbiology, Vol. 23, Issue 7 https://doi.org/10.1111/1462-2920.15617	journal	June 2021
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega Sievers, Fabian; Wilm, Andreas; Dineen, David Molecular Systems Biology, Vol. 7, Issue 1 https://doi.org/10.1038/msb.2011.75	journal	January 2011
Modeling the Habitat Range of Phototrophs in Yellowstone National Park: Toward the Development of a Comprehensive Fitness Landscape Boyd, Eric S.; Fecteau, Kristopher M.; Havig, Jeff R. Frontiers in Microbiology, Vol. 3 https://doi.org/10.3389/fmicb.2012.00221	journal	January 2012
Yellowstone Hot Springs are Organic Chemodiversity Hot Spots Gonsior, Michael; Hertkorn, Norbert; Hinman, Nancy Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-32593-x	journal	September 2018
SWISS-MODEL: homology modelling of protein structures and complexes Waterhouse, Andrew; Bertoni, Martino; Bienert, Stefan Nucleic Acids Research, Vol. 46, Issue W1 https://doi.org/10.1093/nar/gky427	journal	May 2018
Ecological differentiation in planktonic and sediment-associated chemotrophic microbial populations in Yellowstone hot springs Colman, Daniel R.; Feyhl-Buska, Jayme; Robinson, Kirtland J. FEMS Microbiology Ecology, Vol. 92, Issue 9 https://doi.org/10.1093/femsec/fiw137	journal	June 2016
Cytochrome c oxidase in prokaryotes Ludwig, Bernd FEMS Microbiology Letters, Vol. 46, Issue 1 https://doi.org/10.1111/j.1574-6968.1987.tb02451.x	journal	March 1987
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies Kang, Dongwan D.; Li, Feng; Kirton, Edward PeerJ, Vol. 7 https://doi.org/10.7717/peerj.7359	journal	January 2019
High throughput in situ metagenomic measurement of bacterial replication at ultra-low sequencing coverage Emiola, Akintunde; Oh, Julia Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-07240-8	journal	November 2018
Chromosome replication patterns in the hyperthermophilic euryarchaea Archaeoglobus fulgidus and Methanocaldococcus (Methanococcus) jannaschii: Chromosome replication in A. fulgidus and M. jannaschii Maisnier-Patin, Sophie; Malandrin, Laurence; Birkeland, Nils-Kåre Molecular Microbiology, Vol. 45, Issue 5 https://doi.org/10.1046/j.1365-2958.2002.03111.x	journal	September 2002
Thermocrinis ruber gen. nov., sp. nov., a Pink-Filament-Forming Hyperthermophilic Bacterium Isolated from Yellowstone National Park Huber, Robert; Eder, Wolfgang; Heldwein, Stefan Applied and Environmental Microbiology, Vol. 64, Issue 10 https://doi.org/10.1128/AEM.64.10.3576-3583.1998	journal	October 1998
Temperature and microbial interactions drive the deterministic assembly processes in sediments of hot springs He, Qing; Wang, Shang; Hou, Weiguo Science of The Total Environment, Vol. 772 https://doi.org/10.1016/j.scitotenv.2021.145465	journal	June 2021
Distinguishing Biotic and Abiotic Iron Oxidation at Low Temperatures St Clair, Brian; Pottenger, Justin; Debes, Randall ACS Earth and Space Chemistry, Vol. 3, Issue 6 https://doi.org/10.1021/acsearthspacechem.9b00016	journal	May 2019
Ecological Aspects of the Distribution of Different Autotrophic CO ₂ Fixation Pathways Berg, Ivan A. Applied and Environmental Microbiology, Vol. 77, Issue 6 https://doi.org/10.1128/AEM.02473-10	journal	January 2011

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59 BASIC BIOLOGICAL SCIENCES
aerobic
anaerobic
autotrophic
heterotrophic
oxygen availability
dissolved organic carbon
archaea
circumneutral hot spring
silica
subsurface
Yellowstone

Title: Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring

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