Draft Genome Sequence of Stenotrophomonas maltophilia Strain PE591, a Polyethylene-Degrading Bacterium Isolated from Savanna Soil

Frederico, Tayná Diniz; Peixoto, Julianna; de Sousa, Jéssica Fernandes; Vizzotto, Carla Simone; Steindorff, Andrei Stecca; Pinto, Otávio Henrique Bezerra; Krüger, Ricardo Henrique

doi:10.1128/mra.00490-21

Title: Draft Genome Sequence of Stenotrophomonas maltophilia Strain PE591, a Polyethylene-Degrading Bacterium Isolated from Savanna Soil

Journal Article · Thu Aug 12 00:00:00 EDT 2021 · Microbiology Resource Announcements

DOI:https://doi.org/10.1128/mra.00490-21· OSTI ID:1826562

Frederico, Tayná Diniz ^[1]; Peixoto, Julianna ^[1]; de Sousa, Jéssica Fernandes ^[1];

^[1];

^[2]; Pinto, Otávio Henrique Bezerra ^[1];

^[1]

Univ. of Brasília (Brazil)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

We report the genome sequence of a polyethylene-degrading bacterial strain identified as Stenotrophomonas maltophilia strain PE591, which was isolated from plastic debris found in savanna soil. The genome was assembled in 16 scaffolds with a length of 4,751,236 bp, a GC content of 66.5%, and 4,432 predicted genes.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1826562

Journal Information:: Microbiology Resource Announcements, Vol. 10, Issue 32; ISSN 2576-098X

Publisher:: SSPA - American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (19)

FastQ Screen: A tool for multi-genome mapping and quality control Wingett, Steven W.; Andrews, Simon F1000Research, Vol. 7 https://doi.org/10.12688/f1000research.15931.1	journal	January 2018
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy Meier-Kolthoff, Jan P.; Göker, Markus Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-10210-3	journal	May 2019
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth Peng, Y.; Leung, H. C. M.; Yiu, S. M. Bioinformatics, Vol. 28, Issue 11 https://doi.org/10.1093/bioinformatics/bts174	journal	April 2012
Prokka: rapid prokaryotic genome annotation Seemann, T. Bioinformatics, Vol. 30, Issue 14 https://doi.org/10.1093/bioinformatics/btu153	journal	March 2014
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison Richter, Michael; Rosselló-Móra, Ramon; Oliver Glöckner, Frank Bioinformatics, Vol. 32, Issue 6 https://doi.org/10.1093/bioinformatics/btv681	journal	November 2015
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data Coil, David; Jospin, Guillaume; Darling, Aaron E. Bioinformatics, Vol. 31, Issue 4 https://doi.org/10.1093/bioinformatics/btu661	journal	October 2014
Twelve years of SAMtools and BCFtools Danecek, Petr; Bonfield, James K.; Liddle, Jennifer GigaScience, Vol. 10, Issue 2 https://doi.org/10.1093/gigascience/giab008	journal	January 2021
BBMerge – Accurate paired shotgun read merging via overlap Bushnell, Brian; Rood, Jonathan; Singer, Esther PLOS ONE, Vol. 12, Issue 10 https://doi.org/10.1371/journal.pone.0185056	journal	October 2017
The versatility and adaptation of bacteria from the genus Stenotrophomonas Ryan, Robert P.; Monchy, Sebastien; Cardinale, Massimiliano Nature Reviews Microbiology, Vol. 7, Issue 7 https://doi.org/10.1038/nrmicro2163	journal	July 2009
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T. Genome Research, Vol. 25, Issue 7 https://doi.org/10.1101/gr.186072.114	journal	May 2015
LPSN—list of prokaryotic names with standing in nomenclature Parte, Aidan C. Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1111	journal	November 2013
Brazilian Cerrado soil reveals an untapped microbial potential for unpretreated polyethylene biodegradation Peixoto, Julianna; Silva, Luciano P.; Krüger, Ricardo H. Journal of Hazardous Materials, Vol. 324 https://doi.org/10.1016/j.jhazmat.2016.11.037	journal	February 2017
Stenotrophomonas, a New Bacterial Genus for Xanthomonas maltophilia (Hugh 1980) Swings et al. 1983 Palleroni, N. J.; Bradbury, J. F. International Journal of Systematic Bacteriology, Vol. 43, Issue 3 https://doi.org/10.1099/00207713-43-3-606	journal	July 1993
Stenotrophomonas maltophilia: an Emerging Global Opportunistic Pathogen Brooke, J. S. Clinical Microbiology Reviews, Vol. 25, Issue 1 https://doi.org/10.1128/CMR.00019-11	journal	January 2012
Stenotrophomonas lactitubi sp. nov. and Stenotrophomonas indicatrix sp. nov., isolated from surfaces with food contact Weber, Mareike; Schünemann, Wiebke; Fuß, Janina International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 6 https://doi.org/10.1099/ijsem.0.002732	journal	June 2018
Fast gapped-read alignment with Bowtie 2 Langmead, Ben; Salzberg, Steven L. Nature Methods, Vol. 9, Issue 4 https://doi.org/10.1038/nmeth.1923	journal	March 2012
Trimmomatic: a flexible trimmer for Illumina sequence data Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern Bioinformatics, Vol. 30, Issue 15 https://doi.org/10.1093/bioinformatics/btu170	journal	April 2014
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes Chun, Jongsik; Oren, Aharon; Ventosa, Antonio International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 1 https://doi.org/10.1099/ijsem.0.002516	journal	January 2018
Stenotrophomonas cyclobalanopsidis sp. nov., isolated from the leaf spot disease of Cyclobalanopsis patelliformis Bian, Dan-ran; Xue, Han; Piao, Chun-gen Antonie van Leeuwenhoek, Vol. 113, Issue 10 https://doi.org/10.1007/s10482-020-01453-y	journal	August 2020

Similar Records

Complete Genome Sequence of Stenotrophomonas maltophilia Type Strain 810-2 (ATCC 13637)

Journal Article · Thu Sep 04 00:00:00 EDT 2014 · Genome Announcements · OSTI ID:1826562

Davenport, K. W.; Daligault, H. E.; Minogue, T. D.; +10 more

Stenotrophomonas maltophilia differential gene expression in synthetic cystic fibrosis sputum reveals shared and cystic fibrosis strain-specific responses to the sputum environment.

Journal Article · Mon May 20 00:00:00 EDT 2019 · Journal of Bacteriology · OSTI ID:1826562

Willsey, Graham G.; Eckstrom, Korin; LaBauve, Annette E.; +5 more

Genome Sequence of Verrucomicrobium sp. Strain GAS474, a Novel Bacterium Isolated from Soil

Journal Article · Thu Jan 25 00:00:00 EST 2018 · Genome Announcements · OSTI ID:1826562

Pold, Grace; Conlon, Erin M.; Huntemann, Marcel; +9 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES

Title: Draft Genome Sequence of Stenotrophomonas maltophilia Strain PE591, a Polyethylene-Degrading Bacterium Isolated from Savanna Soil

Citation Formats

References (19)

Similar Records

Related Subjects