Photobiological Origins of the Field of Genomic Maintenance
|
journal
|
December 2015 |
UV-Induced DNA Damage and Mutagenesis in Chromatin
|
journal
|
November 2016 |
Nucleotide Excision Repair in Eukaryotes
|
journal
|
October 2013 |
Molecular Mechanisms of Mammalian Global Genome Nucleotide Excision Repair
|
journal
|
February 2006 |
DNA Damage and Associated DNA Repair Defects in Disease and Premature Aging
|
journal
|
August 2019 |
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: A complex genotype–phenotype relationship
|
journal
|
April 2007 |
Differential Nucleotide Excision Repair Susceptibility of Bulky DNA Adducts in Different Sequence Contexts: Hierarchies of Recognition Signals
|
journal
|
January 2009 |
The Sequence Dependence of Human Nucleotide Excision Repair Efficiencies of Benzo[a]pyrene-derived DNA Lesions: Insights into the Structural Factors that Favor Dual Incisions
|
journal
|
March 2009 |
Probing for DNA damage with β-hairpins: Similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro
|
journal
|
July 2011 |
Adenine–DNA Adducts Derived from the Highly Tumorigenic Dibenzo[ a , l ]pyrene Are Resistant to Nucleotide Excision Repair while Guanine Adducts Are Not
|
journal
|
April 2013 |
Dynamics of a Benzo[a]pyrene-derived Guanine DNA Lesion in TGT and CGC Sequence Contexts: Enhanced Mobility in TGT Explains Conformational Heterogeneity, Flexible Bending, and Greater Susceptibility to Nucleotide Excision Repair
|
journal
|
November 2007 |
Lesion Sensing during Initial Binding by Yeast XPC/Rad4: Toward Predicting Resistance to Nucleotide Excision Repair
|
journal
|
October 2018 |
A multistep damage recognition mechanism for global genomic nucleotide excision repair
|
journal
|
March 2001 |
Repair-Resistant DNA Lesions
|
journal
|
July 2017 |
The DNA damage response to transcription stress
|
journal
|
September 2019 |
Functional regulation of the DNA damage-recognition factor DDB2 by ubiquitination and interaction with xeroderma pigmentosum group C protein
|
journal
|
January 2015 |
DNA damage detection in nucleosomes involves DNA register shifting
|
journal
|
May 2019 |
Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair
|
journal
|
July 2012 |
Recognition of DNA damage by the Rad4 nucleotide excision repair protein
|
journal
|
September 2007 |
Structure and mechanism of pyrimidine–pyrimidone (6-4) photoproduct recognition by the Rad4/XPC nucleotide excision repair complex
|
journal
|
May 2019 |
Recognition of DNA Adducts by Human Nucleotide Excision Repair: EVIDENCE FOR A THERMODYNAMIC PROBING MECHANISM
|
journal
|
October 1996 |
Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery
|
journal
|
September 2002 |
DNA Quality Control by Conformational Readout on the Undamaged Strand of the Double Helix
|
journal
|
August 2005 |
DNA repair triggered by sensors of helical dynamics
|
journal
|
November 2007 |
Kinetic gating mechanism of DNA damage recognition by Rad4/XPC
|
journal
|
January 2015 |
Tethering-facilitated DNA ‘opening’ and complementary roles of β-hairpin motifs in the Rad4/XPC DNA damage sensor protein
|
journal
|
October 2020 |
Twist-open mechanism of DNA damage recognition by the Rad4/XPC nucleotide excision repair complex
|
journal
|
March 2016 |
Single-Molecule Imaging Reveals that Rad4 Employs a Dynamic DNA Damage Recognition Process
|
journal
|
October 2016 |
A Compendium of Mutational Signatures of Environmental Agents
|
journal
|
May 2019 |
Enhanced spontaneous DNA twisting/bending fluctuations unveiled by fluorescence lifetime distributions promote mismatch recognition by the Rad4 nucleotide excision repair complex
|
journal
|
December 2017 |
[20] Processing of X-ray diffraction data collected in oscillation mode
|
book
|
January 1997 |
Overview of the CCP 4 suite and current developments
|
journal
|
March 2011 |
Features and development of Coot
|
journal
|
March 2010 |
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
|
journal
|
October 2019 |
Filtering artifacts from lifetime distributions when maximizing entropy using a bootstrapped model
|
journal
|
August 2012 |
Analysis of Kinetics Using a Hybrid Maximum-Entropy/Nonlinear-Least-Squares Method: Application to Protein Folding
|
journal
|
April 2002 |
Light-induced modulation of DNA recognition by the Rad4/XPC damage sensor protein
|
journal
|
January 2021 |
FRETmatrix: a general methodology for the simulation and analysis of FRET in nucleic acids
|
journal
|
September 2012 |
DNA sequence-dependent deformability deduced from protein-DNA crystal complexes
|
journal
|
September 1998 |
Bending and Torsional Flexibility of G/C-rich Sequences as Determined by Cyclization Assays
|
journal
|
December 1995 |
AlphaSpace: Fragment-Centric Topographical Mapping To Target Protein–Protein Interaction Interfaces
|
journal
|
July 2015 |
Distant Neighbor Base Sequence Context Effects in Human Nucleotide Excision Repair of a Benzo[a]pyrene-derived DNA Lesion
|
journal
|
June 2010 |
Nucleotide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: molecular dynamics simulations elucidate how lesion structure and base sequence context impact repair efficiencies
|
journal
|
August 2012 |
Stable binding of human XPC complex to irradiated DNA confers strong discrimination for damaged sites 1 1Edited by M. Yaniv
|
journal
|
July 2000 |
The XPC−HR23B Complex Displays High Affinity and Specificity for Damaged DNA in a True-Equilibrium Fluorescence Assay †
|
journal
|
May 2002 |
Diversity of the damage recognition step in the global genomic nucleotide excision repair in vitro
|
journal
|
April 2001 |
Overproduction, Purification, and Characterization of the XPC Subunit of the Human DNA Repair Excision Nuclease
|
journal
|
August 1996 |
Biochemical and Structural Domain Analysis of Xeroderma Pigmentosum Complementation Group C Protein †
|
journal
|
December 2006 |
Pre-Steady-State Binding of Damaged DNA by XPC−hHR23B Reveals a Kinetic Mechanism for Damage Discrimination †
|
journal
|
February 2006 |
Structural, energetic and dynamic properties of guanine(C8)–thymine(N3) cross-links in DNA provide insights on susceptibility to nucleotide excision repair
|
journal
|
November 2011 |
Base Sequence Context Effects on Nucleotide Excision Repair
|
journal
|
January 2010 |
The Solution Structure of DNA Duplex-Decamer Containing the (6-4) Photoproduct of Thymidylyl(3'5')Thymidine by NMR and Relaxation Matrix Refinement
|
journal
|
March 1995 |
CONTRASTING STRUCTURAL IMPACTS INDUCED BY cis-syn CYCLOBUTANE DIMER AND (6–4) ADDUCT IN DNA DUPLEX DECAMERS: IMPLICATION IN MUTAGENESIS AND REPAIR ACTIVITY
|
journal
|
July 1995 |
Conformational polymorphism or structural invariance in DNA photoinduced lesions: implications for repair rates
|
journal
|
February 2017 |
Conformational changes in the oligonucleotide duples d(GCGTTGCG). d (CGCAACGC) induced by formation of a cis-syn thymine dimer. A two-dimensional NMR study
|
journal
|
January 1987 |
Solution-state structure of a DNA dodecamer duplex containing a Cis-Syn thymine cyclobutane dimer, the major UV photoproduct of DNA
|
journal
|
October 1998 |
Site-specific effect of thymine dimer formation on dAn.dTn tract bending and its biological implications.
|
journal
|
October 1991 |
Crystal structure of a DNA decamer containing a cis-syn thymine dimer
|
journal
|
November 2002 |
Thermodynamic and base-pairing studies of matched and mismatched DNA dodecamer duplexes containing cis-syn, (6-4) and Dewar photoproducts of TT
|
journal
|
August 1998 |
The In Situ Repair Kinetics of Epidermal Thymine Dimers and 6-4 Photoproducts in Human Skin Types I and II
|
journal
|
June 1996 |
Nucleotide excision repair by dual incisions in plants
|
journal
|
April 2016 |
Nucleotide Excision Repair Efficiencies of Bulky Carcinogen–DNA Adducts Are Governed by a Balance between Stabilizing and Destabilizing Interactions
|
journal
|
February 2012 |
Dissociation Dynamics of XPC-RAD23B from Damaged DNA Is a Determining Factor of NER Efficiency
|
journal
|
June 2016 |
A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA
|
journal
|
November 2009 |
μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA
|
journal
|
September 2014 |
Chromosomal landscape of UV damage formation and repair at single-nucleotide resolution
|
journal
|
July 2016 |
Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution
|
journal
|
May 2015 |
Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome
|
journal
|
March 2018 |
Super hotspots and super coldspots in the repair of UV-induced DNA damage in the human genome
|
journal
|
January 2021 |
Cisplatin DNA damage and repair maps of the human genome at single-nucleotide resolution
|
journal
|
September 2016 |
Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs
|
journal
|
January 2019 |
The involvement of nucleotide excision repair proteins in the removal of oxidative DNA damage
|
journal
|
October 2020 |
Xeroderma pigmentosum group C protein interacts physically and functionally with thymine DNA glycosylase
|
journal
|
January 2003 |
Stimulation of DNA Glycosylase Activities by XPC Protein Complex: Roles of Protein-Protein Interactions
|
journal
|
January 2010 |
Regulation of DNA demethylation by the XPC DNA repair complex in somatic and pluripotent stem cells
|
journal
|
April 2017 |
Functional and mechanistic studies of XPC DNA-repair complex as transcriptional coactivator in embryonic stem cells
|
journal
|
April 2015 |
Architecture of the human XPC DNA repair and stem cell coactivator complex
|
journal
|
November 2015 |
A DNA Repair Complex Functions as an Oct4/Sox2 Coactivator in Embryonic Stem Cells
|
journal
|
September 2011 |
NER Factors Are Recruited to Active Promoters and Facilitate Chromatin Modification for Transcription in the Absence of Exogenous Genotoxic Attack
|
journal
|
April 2010 |
Nucleotide Excision Repair and Transcriptional Regulation: TFIIH and Beyond
|
journal
|
June 2016 |
XPC is an RNA polymerase II cofactor recruiting ATAC to promoters by interacting with E2F1
|
journal
|
July 2018 |
UV induced ubiquitination of the yeast Rad4–Rad23 complex promotes survival by regulating cellular dNTP pools
|
journal
|
July 2015 |
Genome-Wide Analysis of the Effects of Location and Number of Stress Response Elements on Gene Expression in Saccharomyces cerevisiae
|
journal
|
November 2008 |
Stress-controlled transcription factors, stress-induced genes and stress tolerance in budding yeast
|
journal
|
October 2000 |
The relationships between XPC binding to conformationally diverse DNA adducts and their excision by the human NER system: Is there a correlation?
|
journal
|
July 2014 |
DNA bending by the human damage recognition complex XPC–HR23B
|
journal
|
March 2003 |
Fluorescence Correlation Spectroscopy of the Binding of Nucleotide Excision Repair Protein XPC-hHr23B with DNA Substrates
|
journal
|
June 2008 |
The human DNA ends proteome uncovers an unexpected entanglement of functional pathways
|
journal
|
February 2016 |
Structural basis of TFIIH activation for nucleotide excision repair
|
journal
|
June 2019 |
Single-molecule visualization reveals the damage search mechanism for the human NER protein XPC-RAD23B
|
journal
|
August 2019 |
Structural insights into the recognition of cisplatin and AAF-dG lesion by Rad14 (XPA)
|
journal
|
June 2015 |
Single molecule analysis reveals monomeric XPA bends DNA and undergoes episodic linear diffusion during damage search
|
journal
|
March 2020 |
Single-molecule analysis reveals two separate DNA-binding domains in the Escherichia coli UvrA dimer
|
journal
|
February 2009 |
Role of the two ATPase domains of Escherichia coli UvrA in binding non-bulky DNA lesions and interaction with UvrB
|
journal
|
November 2010 |
Mechanism of MutS Searching for DNA Mismatches and Signaling Repair
|
journal
|
December 2008 |
Determination of protein-DNA binding constants and specificities from statistical analyses of single molecules: MutS-DNA interactions
|
journal
|
July 2005 |
DNA bending and unbending by MutS govern mismatch recognition and specificity
|
journal
|
November 2003 |
Studying protein-DNA interactions using atomic force microscopy
|
journal
|
January 2018 |
Single-molecule analysis reveals human UV-damaged DNA-binding protein (UV-DDB) dimerizes on DNA via multiple kinetic intermediates
|
journal
|
April 2014 |
Cooperative cluster formation, DNA bending and base-flipping by O 6 -alkylguanine-DNA alkyltransferase
|
journal
|
June 2012 |
Kinetic Mechanism for the Excision of Hypoxanthine by Escherichia coli AlkA and Evidence for Binding to DNA Ends
|
journal
|
April 2011 |
A comprehensive catalogue of somatic mutations from a human cancer genome
|
journal
|
December 2009 |
3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
|
journal
|
September 2003 |
Error estimates on averages of correlated data
|
journal
|
July 1989 |
Free energy simulations: Use of reverse cumulative averaging to determine the equilibrated region and the time required for convergence
|
journal
|
February 2004 |