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Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America

In this study, a suite of complementary environmental geochemical analyses, including NMR and gas chromatography-mass spectrometry (GC-MS) analyses of central metabolites, Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) of secondary metabolites, and lipidomics, was used to investigate the influence of organic matter (OM) quality on the heterotrophic microbial mechanisms controlling peatland CO2, CH4, and CO2:CH4 porewater production ratios in response to climate warming. Our investigations leverage the Spruce and Peatland Responses under Changing Environments (SPRUCE) experiment, where air and peat warming were combined in a whole-ecosystem warming treatment. We hypothesized that warming would enhance the production of plant-derived metabolites, resulting in increased labile OM inputs to the surface peat, thereby enhancing microbial activity and greenhouse gas production. Because shallow peat is most susceptible to enhanced warming, increases in labile OM inputs to the surface, in particular, are likely to result in significant changes to CO2 and CH4 dynamics and methanogenic pathways. In support of this hypothesis, significant correlations were observed between metabolites and temperature consistent with increased availability of labile substrates, which may stimulate more rapid turnover of microbial proteins. An increase in the abundance of methanogenic genes in response to the increase in the abundance of labile substrates was accompanied by a shift toward acetoclastic and methylotrophic methanogenesis. Our results suggest that as peatland vegetation trends toward increasing vascular plant cover with warming, we can expect a concomitant shift toward increasingly methanogenic conditions and amplified climate–peatland feedbacks.

Research Organization:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Sponsoring Organization:
USDOE
DOE Contract Number:
AC05-76RL01830
OSTI ID:
1814492
Report Number(s):
PNNL-SA-152358
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Vol. 118, Issue 25
Country of Publication:
United States
Language:
English

References (69)

Carbon Dioxide and Methane Exchange of a Subarctic Heath in Response to Climate Change Related Environmental Manipulations May 1997
Estimating carbon accumulation rates of undrained mires in Finland–application to boreal and subarctic regions January 2002
Rapid expansion of northern peatlands and doubled estimate of carbon storage October 2019
Greenhouse gas balance over thaw-freeze cycles in discontinuous zone permafrost: C Balance of Permafrost Peat February 2017
Moving Beyond Global Warming Potentials to Quantify the Climatic Role of Ecosystems May 2015
Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments March 1999
Hydrogenation of organic matter as a terminal electron sink sustains high CO2:CH4 production ratios during anaerobic decomposition October 2017
Variation in methane production pathways associated with permafrost decomposition in collapse scar bogs of Alberta, Canada: VARIATION IN METHANE PRODUCTION October 2007
Carbon loss from northern circumpolar permafrost soils amplified by rhizosphere priming July 2020
Methane Concentration and Stable Isotope Distribution as Evidence of Rhizospheric Processes: Comparison of a Fen and Bog in the Glacial Lake Agassiz Peatland Complex September 2000
Radiocarbon and stable carbon isotopic evidence for transport and transformation of dissolved organic carbon, dissolved inorganic carbon, and CH 4 in a northern Minnesota peatland December 2000
Radiocarbon evidence for the importance of surface vegetation on fermentation and methanogenesis in contrasting types of boreal peatlands: IMPORTANCE OF SURFACE VEGETATION December 2008
Organic matter transformation in the peat column at Marcell Experimental Forest: Humification and vertical stratification: Organic matter dynamics April 2014
Does dissolved organic matter or solid peat fuel anaerobic respiration in peatlands? September 2019
Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production April 2014
Characterization of dissolved organic matter in northern peatland soil porewaters by ultra high resolution mass spectrometry August 2010
Methane fluxes show consistent temperature dependence across microbial to ecosystem scales March 2014
Stoichiometry and temperature sensitivity of methanogenesis and CO 2 production from saturated polygonal tundra in Barrow, Alaska November 2014
Impact of Warming on Greenhouse Gas Production and Microbial Diversity in Anoxic Peat From a Sphagnum-Dominated Bog (Grand Rapids, Minnesota, United States) April 2019
Stability of peatland carbon to rising temperatures December 2016
Attaining whole-ecosystem warming using air and deep-soil heating methods with an elevated CO 2 atmosphere January 2017
Rapid loss of an ecosystem engineer: Sphagnum decline in an experimentally warmed bog October 2019
Ecosystem warming extends vegetation activity but heightens vulnerability to cold temperatures August 2018
Massive peatland carbon banks vulnerable to rising temperatures May 2020
Automated Analysis of Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectra of Natural Organic Matter July 2006
Advanced Molecular Techniques Provide New Rigorous Tools for Characterizing Organic Matter Quality in Complex Systems June 2018
Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane September 1999
Characterization of dissolved organic matter in Lake Superior and its watershed using ultrahigh resolution mass spectrometry February 2012
Degradation of natural organic matter: A thermodynamic analysis April 2011
Are oxygen limitations under recognized regulators of organic carbon turnover in upland soils? January 2016
Targeted Profiling:  Quantitative Analysis of 1 H NMR Metabolomics Data July 2006
Comparative metabolic profiling of pigmented rice (Oryza sativa L.) cultivars reveals primary metabolites are correlated with secondary metabolites January 2013
MetaboliteDetector: Comprehensive Analysis Tool for Targeted and Nontargeted GC/MS Based Metabolome Analysis May 2009
FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry December 2009
LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data January 2017
The PRIDE database and related tools and resources in 2019: improving support for quantification data November 2018
KEGG: Kyoto Encyclopedia of Genes and Genomes January 2000
New approach for understanding genome variations in KEGG October 2018
Toward understanding the origin and evolution of cellular organisms September 2019
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample June 2010
Cutadapt removes adapter sequences from high-throughput sequencing reads May 2011
DADA2: High-resolution sample inference from Illumina amplicon data May 2016
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools November 2012
Differential abundance analysis for microbial marker-gene surveys September 2013
PEAR: a fast and accurate Illumina Paired-End reAd mergeR October 2013
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data September 2010
Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths July 2019
The Sequence Alignment/Map format and SAMtools June 2009
Partitioning pathways of CO2 production in peatlands with stable carbon isotopes December 2012
Vertical Stratification of Peat Pore Water Dissolved Organic Matter Composition in a Peat Bog in Northern Minnesota: Pore Water DOM composition in a peat bog February 2018
Microbial Metabolic Potential for Carbon Degradation and Nutrient (Nitrogen and Phosphorus) Acquisition in an Ombrotrophic Peatland March 2014
Microbial Community Stratification Linked to Utilization of Carbohydrates and Phosphorus Limitation in a Boreal Peatland at Marcell Experimental Forest, Minnesota, USA March 2014
Betaine lipids and zwitterionic phospholipids in plants and fungi November 1997
Closing the loop on the GABA shunt in plants: are GABA metabolism and signaling entwined? June 2015
Methylotrophic methanogenesis in Sphagnum-dominated peatland soils March 2018
Discovery of a novel methanogen prevalent in thawing permafrost February 2014
An evolving view of methane metabolism in the Archaea January 2019
Molecular transformation and degradation of refractory dissolved organic matter in the Atlantic and Southern Ocean February 2014
Unifying Concepts Linking Dissolved Organic Matter Composition to Persistence in Aquatic Ecosystems February 2018
Untargeted metabolomic profiling of Sphagnum fallax reveals novel antimicrobial metabolites November 2019
Aerobic and Anaerobic Catabolism of Vanillic Acid and Some Other Methoxy-Aromatic Compounds by Pseudomonas sp. Strain PN-1 December 1983
Effects of temperature on biological degradation of phenols, benzoates and phthalates under methanogenic conditions March 2005
Sugars in soil and sweets for microorganisms: Review of origin, content, composition and fate November 2015
Glutamine signalling in bacteria January 2007
Role of glutamate metabolism in bacterial responses towards acid and other stresses September 2012
Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales February 2013
Small differences in ombrotrophy control regional-scale variation in methane cycling among Sphagnum-dominated peatlands June 2018
The potential importance of methylated substrates in methane production within three northern Minnesota peatlands November 2020
Disproportionate increase in freshwater methane emissions induced by experimental warming June 2020