|
Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis
|
journal
|
September 2019 |
|
Degradation and fermentation of cellulose by the rumen anaerobic fungi in axenic cultures or in association with cellulolytic bacteria
|
journal
|
September 1992 |
|
Degradation of Fresh Ryegrass by Methanogenic Co-Cultures of Ruminal Fungi Grown in the Presence or Absence of Fibrobacter succinogenes
|
journal
|
July 2002 |
|
Co-cultivation of the anaerobic fungus Anaeromyces robustus with Methanobacterium bryantii enhances transcription of carbohydrate active enzymes
|
journal
|
May 2019 |
|
Biological control of postharvest diseases by microbial antagonists: how many mechanisms of action?
|
journal
|
January 2016 |
|
Cellulose degradation by two rumen anaerobic fungi in monoculture or in coculture with rumen bacteria
|
journal
|
January 1991 |
|
Degradation of wheat straw and maize stem by a monocentric and a polycentric rumen fungi, alone or in association with rumen cellulolytic bacteria
|
journal
|
June 1993 |
|
Basic local alignment search tool
|
journal
|
October 1990 |
|
Anaerobic fungi in herbivorous animals
|
journal
|
February 1994 |
|
Biogenesis, transport and remodeling of lysophospholipids in Gram-negative bacteria
|
journal
|
November 2017 |
|
Mechanisms of RND multidrug efflux pumps
|
journal
|
May 2009 |
|
Recent insights into iron import by bacteria
|
journal
|
April 2011 |
|
Heterochromatin influences the secondary metabolite profile in the plant pathogen Fusarium graminearum
|
journal
|
January 2012 |
|
Lae1 regulates expression of multiple secondary metabolite gene clusters in Fusarium verticillioides
|
journal
|
August 2012 |
|
Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression
|
journal
|
May 2017 |
|
Molecular crosstalk between the endophyte Paraconiothyrium variabile and the phytopathogen Fusarium oxysporum – Modulation of lipoxygenase activity and beauvericin production during the interaction
|
journal
|
June 2020 |
|
Regulation of the AcrAB-TolC efflux pump in Enterobacteriaceae
|
journal
|
September 2018 |
|
One Step Forward for Reducing False Positive and False Negative Compound Identifications from Mass Spectrometry Metabolomics Data: New Algorithms for Constructing Extracted Ion Chromatograms and Detecting Chromatographic Peaks
|
journal
|
August 2017 |
|
Induced Production of N -Formyl Alkaloids from Aspergillus fumigatus by Co-culture with Streptomyces peucetius
|
journal
|
July 2011 |
|
Local dispersal promotes biodiversity in a real-life game of rock–paper–scissors
|
journal
|
July 2002 |
|
Antibiotic-mediated antagonism leads to a bacterial game of rock–paper–scissors in vivo
|
journal
|
March 2004 |
|
Microcins mediate competition among Enterobacteriaceae in the inflamed gut
|
journal
|
October 2016 |
|
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
|
journal
|
August 2016 |
|
Chromatin-level regulation of biosynthetic gene clusters
|
journal
|
May 2009 |
|
HISAT: a fast spliced aligner with low memory requirements
|
journal
|
March 2015 |
|
A parts list for fungal cellulosomes revealed by comparative genomics
|
journal
|
May 2017 |
|
Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst
|
journal
|
May 2011 |
|
Histone methylation: a dynamic mark in health, disease and inheritance
|
journal
|
April 2012 |
|
Cooperative interactions between seed-borne bacterial and air-borne fungal pathogens on rice
|
journal
|
January 2018 |
|
Dereplication of microbial metabolites through database search of mass spectra
|
journal
|
October 2018 |
|
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information
|
journal
|
March 2019 |
|
Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture
|
journal
|
January 2018 |
|
The role of the TolC family in protein transport and multidrug efflux. : From stereochemical certainty to mechanistic hypothesis
|
journal
|
October 2001 |
|
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
|
journal
|
September 2005 |
|
The phage abortive infection system, ToxIN, functions as a protein–RNA toxin–antitoxin pair
|
journal
|
January 2009 |
|
Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans
|
journal
|
August 2009 |
|
Anaerobic gut fungi are an untapped reservoir of natural products
|
journal
|
April 2021 |
|
Peptide Bond Formation in Nonribosomal Peptide Biosynthesis: CATALYTIC ROLE OF THE CONDENSATION DOMAIN
|
journal
|
August 1998 |
|
Exploitation of microbial antagonists for the control of postharvest diseases of fruits: a review
|
journal
|
January 2018 |
|
MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data
|
journal
|
January 2006 |
|
The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria
|
journal
|
August 2006 |
|
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
|
journal
|
October 2012 |
|
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
|
journal
|
November 2013 |
|
WSTF-ISWI chromatin remodeling complex targets heterochromatic replication foci
|
journal
|
May 2002 |
|
Diauxic growth of Fibrobacter succinogenes S85 on cellobiose and lactose
|
journal
|
July 2017 |
|
Rfam: an RNA family database
|
journal
|
January 2003 |
|
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
|
journal
|
November 2012 |
|
MycoCosm portal: gearing up for 1000 fungal genomes
|
journal
|
December 2013 |
|
MetaboAnalyst 3.0—making metabolomics more meaningful
|
journal
|
April 2015 |
|
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
|
journal
|
November 2018 |
|
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
|
journal
|
October 2018 |
|
The Colletotrichum lagenarium MAP Kinase Gene CMK1 Regulates Diverse Aspects of Fungal Pathogenesis
|
journal
|
April 2000 |
|
Comparison of growth characteristics of anaerobic fungi isolated from ruminant and non-ruminant herbivores during cultivation in a defined medium
|
journal
|
June 1991 |
|
Distribution of anaerobic fungi in the digestive tract of cattle and their survival in faeces
|
journal
|
June 1993 |
|
Determination of growth of anaerobic fungi on soluble and cellulosic substrates using a pressure transducer
|
journal
|
March 1995 |
|
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
|
journal
|
November 2003 |
|
Signalling pathways connecting mycotoxin production and sporulation
|
journal
|
July 2006 |
|
Heterochromatic marks are associated with the repression of secondary metabolism clusters in Aspergillus nidulans
|
journal
|
February 2010 |
|
Coordination of secondarymetabolism and development in fungi: the velvet familyof regulatory proteins
|
journal
|
January 2012 |
|
Translating the Histone Code
|
journal
|
August 2001 |
|
Outer Membrane Active Transport: Structure of the BtuB:TonB Complex
|
journal
|
June 2006 |
|
The type VI secretion system of Vibrio cholerae fosters horizontal gene transfer
|
journal
|
January 2015 |
|
Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes
|
journal
|
February 2016 |
|
The ecology of the microbiome: Networks, competition, and stability
|
journal
|
November 2015 |
|
Bacterial antagonism in host-associated microbial communities
|
journal
|
September 2018 |
|
Antibiosis between Ruminal Bacteria and Ruminal Fungi
|
journal
|
July 2000 |
|
Regulation of Fumonisin B 1 Biosynthesis and Conidiation in Fusarium verticillioides by a Cyclin-Like (C-Type) Gene, FCC1
|
journal
|
April 2001 |
|
Histone Deacetylase Activity Regulates Chemical Diversity in Aspergillus
|
journal
|
September 2007 |
|
LaeA, a Regulator of Secondary Metabolism in Aspergillus spp.
|
journal
|
April 2004 |
|
The Phylogenomic Diversity of Herbivore-Associated Fibrobacter spp. Is Correlated to Lignocellulose-Degrading Potential
|
journal
|
December 2018 |
|
Visualization of three-way comparisons of omics data
|
journal
|
January 2007 |
|
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
|
journal
|
January 2004 |
|
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
|
journal
|
December 2014 |
|
Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus
|
journal
|
December 2017 |
|
A Novel Regulator Couples Sporogenesis and Trehalose Biogenesis in Aspergillus nidulans
|
journal
|
October 2007 |
|
Functional Analyses of Trichoderma reesei LAE1 Reveal Conserved and Contrasting Roles of This Regulator
|
journal
|
February 2013 |
|
Combined Genomic, Transcriptomic, Proteomic, and Physiological Characterization of the Growth of Pecoramyces sp. F1 in Monoculture and Co-culture With a Syntrophic Methanogen
|
journal
|
March 2019 |
|
Biocontrol of Postharvest Fruit Fungal Diseases by Bacterial Antagonists: A Review
|
journal
|
March 2019 |