Life without RNase P
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May 2008 |
QUAST: quality assessment tool for genome assemblies
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February 2013 |
Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
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October 2008 |
Accurate and complete genomes from metagenomes
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March 2020 |
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
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March 2010 |
Characterization of the unlinked 16S rDNA and 23S-5S rRNA operon of Wolbachia pipientis, a prokaryotic parasite of insect gonads
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January 1995 |
Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three Salmonella enterica serovars, Typhimurium, Typhi and Paratyphi
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December 2000 |
A mew computer method for the storage and manipulation of DNA gel reading data
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January 1980 |
Fast and accurate short read alignment with Burrows-Wheeler transform
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May 2009 |
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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October 2017 |
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
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May 2019 |
Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
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June 2011 |
New approaches for metagenome assembly with short reads
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February 2019 |
Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer
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March 2016 |
Complete Genome of a Member of a New Bacterial Lineage in the Microgenomates Group Reveals an Unusual Nucleotide Composition Disparity Between Two Strands of DNA and Limited Metabolic Potential
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February 2020 |
Characterization of a putative 23S-5S rRNA operon of buchnera aphidicola (endosymbiont of aphids) unlinked to the 16S rRNA-encoding gene
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March 1995 |
A Whole-Genome Assembly of Drosophila
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March 2000 |
Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs
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May 2004 |
Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments
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March 2017 |
Community dynamics and functional characteristics of naphthalene-degrading populations in contaminated surface sediments and hypoxic/anoxic groundwater: Dynamics of groundwater naphthalene biodegradation
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August 2018 |
Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective - Not Only Size Matters!
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January 2017 |
Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
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January 2018 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
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March 2010 |
The ‘1% culturability paradigm’ needs to be carefully defined
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September 2019 |
Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation
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December 2017 |
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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May 2015 |
Gap5—editing the billion fragment sequence assembly
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May 2010 |
Ribonuclease P: the diversity of a ubiquitous RNA processing enzyme
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June 1999 |
Plasmid detection and assembly in genomic and metagenomic data sets
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May 2019 |
Complete, closed bacterial genomes from microbiomes using nanopore sequencing
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February 2020 |
VARNA: Interactive drawing and editing of the RNA secondary structure
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April 2009 |
Application of tetranucleotide frequencies for the assignment of genomic fragments
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September 2004 |
Discovery of a minimal form of RNase P in Pyrobaculum
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December 2010 |
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples
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July 2015 |
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
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May 2018 |
Rfam: Wikipedia, clans and the "decimal" release
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November 2010 |
KBase: The United States Department of Energy Systems Biology Knowledgebase
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July 2018 |
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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May 2012 |
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
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April 2016 |
Minimal and RNA-free RNase P in Aquifex aeolicus
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October 2017 |
Unusual biology across a group comprising more than 15% of domain Bacteria
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June 2015 |
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
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May 2013 |
Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community
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June 2017 |
Efficient de novo assembly of large genomes using compressed data structures
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December 2011 |
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
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May 2013 |
Isolation of Borrelia burgdorferi from ticks in the Highlands of Scotland
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January 1999 |
Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly
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April 2013 |
Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome
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January 2020 |
Clades of huge phages from across Earth’s ecosystems
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February 2020 |
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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November 2019 |
Unlinked rRNA genes are widespread among bacteria and archaea
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November 2019 |
Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon
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July 2018 |
MetaQUAST: evaluation of metagenome assemblies
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November 2015 |
Background Adjusted Alignment-Free Dissimilarity Measures Improve the Detection of Horizontal Gene Transfer
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journal
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April 2018 |
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
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September 2017 |
Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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November 2018 |
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
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October 2016 |
Genome dynamics in a natural archaeal population
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January 2007 |
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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January 2019 |
Infernal 1.1: 100-fold faster RNA homology searches
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September 2013 |
Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes: OC Oxidation Processes Across Vegetation
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December 2017 |
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
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November 2014 |
Genomic evolution drives the evolution of the translation system
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December 1995 |
Novel arrangement of rRNA genes in Mycoplasma gallisepticum: separation of the 16S gene of one set from the 23S and 5S genes.
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January 1989 |