Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca

Ghodhbane-Gtari, Faten; Beauchemin, Nicholas; Louati, Moussa; Nouioui, Imen; Ktari, Amir; Hezbri, Karima; Gueddou, Abdellatif; Chen, Amy; Huntemann, Marcel; Ivanova, Natalia; Kyrpides, Nikos; Markowitz, Victor; Mavrommatis, Kostas; Pagani, Ioanna; Sen, Arnab; Wall, Luis; Woyke, Tanja; Gtari, Maher; Tisa, Louis S.

doi:10.1128/genomeA.00799-16

Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca

Journal Article · Thu Aug 25 00:00:00 EDT 2016 · Genome Announcements

DOI:https://doi.org/10.1128/genomeA.00799-16· OSTI ID:1786491

Ghodhbane-Gtari, Faten ^[1]; Beauchemin, Nicholas ^[2]; Louati, Moussa ^[1]; Nouioui, Imen ^[1]; Ktari, Amir ^[1]; Hezbri, Karima ^[1]; Gueddou, Abdellatif ^[1]; Chen, Amy ^[3]; Huntemann, Marcel ^[3]; Ivanova, Natalia ^[3]; Kyrpides, Nikos ^[3]; Markowitz, Victor ^[3]; Mavrommatis, Kostas ^[3]; Pagani, Ioanna ^[3]; Sen, Arnab ^[4]; Wall, Luis ^[5]; Woyke, Tanja ^[3]; Gtari, Maher ^[1]; Tisa, Louis S. ^[2]

University of Tunis-El Manar, Tunis, Tunisia
University of New Hampshire, Durham, New Hampshire, USA
DOE Joint Genome Institute, Walnut Creek, California, USA
University of North Bengal, Siliguri, India
University of Quilmes, Quilmes, Argentina

ABSTRACT

Here, we report the first genome sequence of a Nocardia plant endophyte , N. casuarinae strain BMG51109, isolated from Casuarina glauca root nodules. The improved high-quality draft genome sequence contains 8,787,999 bp with a 68.90% GC content and 7,307 predicted protein-coding genes.

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1786491

Alternate ID(s):: OSTI ID: 1378988

Journal Information:: Genome Announcements, Journal Name: Genome Announcements Journal Issue: 4 Vol. 4; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (12)

Ecology and Physiology of Non-Frankia Actinobacteria from Actinorhizal Plants Ghodhbane-Gtari, Faten; Tisa, Louis S. Plasticity in Plant-Growth-Promoting and Phytopathogenic Bacteria https://doi.org/10.1007/978-1-4614-9203-0_2	book	January 2014
Nocardia casuarinae sp. nov., an actinobacterial endophyte isolated from root nodules of Casuarina glauca Ghodhbane-Gtari, Faten; Nouioui, Imen; Salem, Karima Antonie van Leeuwenhoek, Vol. 105, Issue 6 https://doi.org/10.1007/s10482-014-0168-6	journal	April 2014
Isolation and characterization of non-Frankia actinobacteria from root nodules of Alnus glutinosa, Casuarina glauca and Elaeagnus angustifolia Ghodhbane-Gtari, Faten; Essoussi, Imene; Chattaoui, Mayssa Symbiosis, Vol. 50, Issue 1-2 https://doi.org/10.1007/s13199-009-0029-7	journal	December 2009
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia Nature Methods, Vol. 7, Issue 6 https://doi.org/10.1038/nmeth.1457	journal	May 2010
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data Chin, Chen-Shan; Alexander, David H.; Marks, Patrick Nature Methods, Vol. 10, Issue 6 https://doi.org/10.1038/nmeth.2474	journal	May 2013
IMG ER: a system for microbial genome annotation expert review and curation Markowitz, Victor M.; Mavromatis, Konstantinos; Ivanova, Natalia N. Bioinformatics, Vol. 25, Issue 17 https://doi.org/10.1093/bioinformatics/btp393	journal	June 2009
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification Reddy, T. B. K.; Thomas, Alex D.; Stamatis, Dimitri Nucleic Acids Research, Vol. 43, Issue D1 https://doi.org/10.1093/nar/gku950	journal	October 2014
Nocardia callitridis sp. nov., an endophytic actinobacterium isolated from a surface-sterilized root of an Australian native pine tree Kaewkla, O.; Franco, C. M. M. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 7 https://doi.org/10.1099/ijs.0.016337-0	journal	August 2009
Nocardia endophytica sp. nov., an endophytic actinomycete isolated from the oil-seed plant Jatropha curcas L. Xing, K.; Qin, S.; Fei, S. -M. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 8 https://doi.org/10.1099/ijs.0.027391-0	journal	September 2010
Nocardia artemisiae sp. nov., an endophytic actinobacterium isolated from a surface-sterilized stem of Artemisia annua L. Zhao, G. -Z.; Li, J.; Zhu, W. -Y. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 12 https://doi.org/10.1099/ijs.0.029306-0	journal	January 2011
Prodigal: prokaryotic gene recognition and translation initiation site identification Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F. BMC Bioinformatics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2105-11-119	journal	March 2010
The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes Mavromatis, Konstantinos; Ivanova, Natalia N.; Chen, I-Min A. Standards in Genomic Sciences, Vol. 1, Issue 1 https://doi.org/10.4056/sigs.632	journal	July 2009

Similar Records

Permanent Draft Genome Sequence of Nocardia sp. BMG111209, an Actinobacterium Isolated from Nodules of Casuarina glauca

Journal Article · Thu Aug 25 00:00:00 EDT 2016 · Genome Announcements · OSTI ID:1786483

Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca

Citation Formats

References (12)

Similar Records

Related Subjects