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High‐severity wildfire leads to multi‐decadal impacts on soil biogeochemistry in mixed‐conifer forests
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journal
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February 2020 |
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Carbon control on terrestrial ecosystem function across contrasting site productivities: the carbon connection revisited
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journal
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May 2019 |
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Principles of Terrestrial Ecosystem Ecology
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September 2011 |
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The Components of Nitrogen Availability Assessments in Forest Soils
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book
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January 1989 |
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Unexpected control of soil carbon turnover by soil carbon concentration
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journal
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August 2013 |
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Microbial carbon use efficiency: accounting for population, community, and ecosystem-scale controls over the fate of metabolized organic matter
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journal
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February 2016 |
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Multiple models and experiments underscore large uncertainty in soil carbon dynamics
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journal
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October 2018 |
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How deep is the soil studied – an analysis of four soil science journals
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journal
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May 2020 |
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Short-term responses of ecosystem respiration to warming and nitrogen addition in an alpine swamp meadow
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journal
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May 2019 |
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FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
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journal
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April 2016 |
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Effect of temperature on metabolic activity of intact microbial communities: Evidence for altered metabolic pathway activity but not for increased maintenance respiration and reduced carbon use efficiency
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journal
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October 2011 |
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Microbial carbon use efficiency and biomass turnover times depending on soil depth – Implications for carbon cycling
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journal
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May 2016 |
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Soil microbes and their response to experimental warming over time: A meta-analysis of field studies
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journal
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April 2017 |
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Changes in substrate availability drive carbon cycle response to chronic warming
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journal
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July 2017 |
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Microbial competition for nitrogen and carbon is as intense in the subsoil as in the topsoil
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journal
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February 2018 |
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Clarifying the interpretation of carbon use efficiency in soil through methods comparison
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journal
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January 2019 |
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Warming alters fungal communities and litter chemistry with implications for soil carbon stocks
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journal
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May 2019 |
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Physical mechanisms for soil moisture effects on microbial carbon-use efficiency in a sandy loam soil in the western United States
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journal
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November 2020 |
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MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
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journal
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June 2016 |
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Regulation of soil phosphatase and chitinase activity by N and P availability
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journal
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January 2000 |
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Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest
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journal
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April 2014 |
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Estimating coverage in metagenomic data sets and why it matters
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journal
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May 2014 |
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The microbe-mediated mechanisms affecting topsoil carbon stock in Tibetan grasslands
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journal
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February 2015 |
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Warming enhances old organic carbon decomposition through altering functional microbial communities
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journal
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April 2017 |
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Persistence of soil organic matter as an ecosystem property
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journal
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October 2011 |
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Quantifying global soil carbon losses in response to warming
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journal
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November 2016 |
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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journal
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August 2017 |
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KBase: The United States Department of Energy Systems Biology Knowledgebase
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journal
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July 2018 |
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The temperature response of soil microbial efficiency and its feedback to climate
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journal
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January 2013 |
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Fast and sensitive taxonomic classification for metagenomics with Kaiju
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journal
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April 2016 |
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Increased cuticular carbon sequestration and lignin oxidation in response to soil warming
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journal
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November 2008 |
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UPARSE: highly accurate OTU sequences from microbial amplicon reads
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journal
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August 2013 |
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Fast and sensitive protein alignment using DIAMOND
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journal
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November 2014 |
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QIIME allows analysis of high-throughput community sequencing data
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journal
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April 2010 |
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Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change
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journal
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September 2019 |
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High throughput in situ metagenomic measurement of bacterial replication at ultra-low sequencing coverage
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journal
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November 2018 |
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High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
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journal
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November 2018 |
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Microbial carbon use efficiency predicted from genome-scale metabolic models
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journal
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August 2019 |
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Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
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journal
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May 2018 |
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Ecological selection for small microbial genomes along a temperate-to-thermal soil gradient
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journal
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November 2018 |
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Genome-centric view of carbon processing in thawing permafrost
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journal
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July 2018 |
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Niche tradeoffs, neutrality, and community structure: A stochastic theory of resource competition, invasion, and community assembly
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journal
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July 2004 |
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Soil warming, carbon-nitrogen interactions, and forest carbon budgets
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journal
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May 2011 |
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Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths
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journal
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July 2019 |
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Continental-scale patterns of extracellular enzyme activity in the subsoil: an overlooked reservoir of microbial activity
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journal
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October 2020 |
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A Greedy Algorithm for Aligning DNA Sequences
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journal
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February 2000 |
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Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets
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journal
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October 2013 |
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Trimmomatic: a flexible trimmer for Illumina sequence data
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April 2014 |
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MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
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journal
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October 2015 |
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Metagenome-assembled genome distribution and key functionality highlight importance of aerobic metabolism in Svalbard permafrost
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journal
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April 2020 |
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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journal
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November 2012 |
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The carbohydrate-active enzymes database (CAZy) in 2013
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journal
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November 2013 |
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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journal
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May 2015 |
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metaSPAdes: a new versatile metagenomic assembler
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journal
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March 2017 |
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How interactions between microbial resource demands, soil organic matter stoichiometry, and substrate reactivity determine the direction and magnitude of soil respiratory responses to warming
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journal
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October 2012 |
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Identifying the microbial taxa that consistently respond to soil warming across time and space
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journal
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November 2016 |
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Microbial carbon limitation: The need for integrating microorganisms into our understanding of ecosystem carbon cycling
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journal
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April 2020 |
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Temperature and soil organic matter decomposition rates - synthesis of current knowledge and a way forward
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journal
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August 2011 |
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Thermal adaptation of soil microbial respiration to elevated temperature
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journal
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December 2008 |
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The whole-soil carbon flux in response to warming
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journal
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March 2017 |
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Long-term pattern and magnitude of soil carbon feedback to the climate system in a warming world
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journal
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October 2017 |
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Metatranscriptomic Analysis of Arctic Peat Soil Microbiota
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journal
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July 2014 |
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Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils
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journal
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September 2016 |
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UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
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journal
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December 2005 |
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The Emergence of 2-Oxoglutarate as a Master Regulator Metabolite
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September 2015 |
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Bacterial Secondary Metabolite Biosynthetic Potential in Soil Varies with Phylum, Depth, and Vegetation Type
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journal
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June 2020 |
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Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons
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journal
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October 2019 |
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Carbon Use Efficiency and Its Temperature Sensitivity Covary in Soil Bacteria
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journal
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January 2020 |
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Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
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journal
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December 2015 |
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Decomposition and nutrient dynamics of ponderosa pine needles in a Mediterranean-type climate
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journal
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March 1992 |
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Fungal Molecular Systematics
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November 1991 |
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Prodigal: prokaryotic gene recognition and translation initiation site identification
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journal
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March 2010 |
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Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin
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January 2012 |
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The RAST Server: Rapid Annotations using Subsystems Technology
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January 2008 |
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Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
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January 2013 |
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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December 2014 |
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Accelerated Profile HMM Searches
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October 2011 |
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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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April 2013 |
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Expression of a β-Mannosidase from Paenibacillus polymyxa A-8 in Escherichia coli and Characterization of the Recombinant Enzyme
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November 2014 |
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Fitting Linear Mixed-Effects Models Using lme4
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journal
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January 2015 |
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Terrestrial phosphorus limitation: mechanisms, implications, and nitrogen–phosphorus interactions
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January 2010 |
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The Vertical Distribution of soil Organic Carbon and its Relation to Climate and Vegetation
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April 2000 |
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Assessing nutrient limitation in complex forested ecosystems: alternatives to large-scale fertilization experiments
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journal
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March 2014 |
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Mineral Assemblage and Aggregates Control Carbon Dynamics in a California Conifer Forest
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journal
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January 2005 |
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Drying-Wetting Cycles: Effect on Deep Soil Carbon
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journal
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January 2018 |
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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January 2015 |