Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota

McKay, Luke J.; Dlakić, Mensur; Fields, Matthew W.; Delmont, Tom O.; Eren, A. Murat; Jay, Zackary J.; Klingelsmith, Korinne B.; Rusch, Douglas B.; Inskeep, William P.

doi:10.1038/s41564-019-0362-4

Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota

Journal Article · Mon Mar 04 00:00:00 EST 2019 · Nature Microbiology

DOI:https://doi.org/10.1038/s41564-019-0362-4· OSTI ID:1779059

^[1]; ^[2]; ^[3]; ^[4]; ^[5]; ^[6]; Klingelsmith, Korinne B. ^[6]; Rusch, Douglas B. ^[7]; ^[8]

Montana State Univ., Bozeman, MT (United States). Dept. of Land Resources and Environmental Sciences; Montana State Univ., Bozeman, MT (United States). Center for Biofilm Engineering
Montana State Univ., Bozeman, MT (United States). Dept. of Microbiology and Immunology
Montana State Univ., Bozeman, MT (United States). Center for Biofilm Engineering; Montana State Univ., Bozeman, MT (United States). Dept. of Microbiology and Immunology
Univ. of Chicago, IL (United States). Dept. of Medicine
Univ. of Chicago, IL (United States). Dept. of Medicine; Marine Biological Laboratory, Woods Hole, MA (United States). Josephine Bay Paul Center
Montana State Univ., Bozeman, MT (United States). Center for Biofilm Engineering
Indiana Univ., Bloomington, IN (United States). Informatics Group
Montana State Univ., Bozeman, MT (United States). Dept. of Land Resources and Environmental Sciences; Montana State Univ., Bozeman, MT (United States). Thermal Biology Institute

Phylogenetic and geological evidence supports the hypothesis that life on Earth originated in thermal environments and conserved energy through methanogenesis or sulfur reduction. Here we describe two populations of the deeply rooted archaeal phylum Korarchaeota, which were retrieved from the metagenome of a circumneutral, suboxic hot spring that contains high levels of sulfate, sulfide, methane, hydrogen and carbon dioxide. One population is closely related to ‘Candidatus Korarchaeum cryptofilum OPF8’, while the more abundant korarchaeote, ‘Candidatus Methanodesulfokores washburnensis’, contains genes that are necessary for anaerobic methane and dissimilatory sulfur metabolisms. Phylogenetic and ancestral reconstruction analyses suggest that methane metabolism originated in the Korarchaeota, whereas genes for dissimilatory sulfite reduction were horizontally transferred to the Korarchaeota from the Firmicutes. Interactions among enzymes involved in both metabolisms could facilitate exergonic, sulfite-dependent, anaerobic oxidation of methane to methanol; alternatively, ‘Ca. M. washburnensis’ could conduct methanogenesis and sulfur reduction independently. Metabolic reconstruction suggests that ‘Ca. M. washburnensis’ is a mixotroph, capable of amino acid uptake, assimilation of methane-derived carbon and/or CO₂ fixation by archaeal type III-b RuBisCO for scavenging ribose carbon. Our findings link anaerobic methane metabolism and dissimilatory sulfur reduction within a single deeply rooted archaeal population and have implications for the evolution of these traits throughout the Archaea.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1779059

Journal Information:: Nature Microbiology, Journal Name: Nature Microbiology Journal Issue: 4 Vol. 4; ISSN 2058-5276

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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