skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Targeting hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase for lignin modification in Brachypodium distachyon

Journal Article · · Biotechnology for Biofuels

Background: Hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase (HCT) is a central enzyme of the so-called “esters” pathway to monolignols. As originally envisioned, HCT functions twice in this pathway, to form coumaroyl shikimate and then, in the “reverse” direction, to convert caffeoyl shikimate to caffeoyl CoA. The discovery of a caffeoyl shikimate esterase (CSE) that forms caffeic acid directly from caffeoyl shikimate calls into question the need for the reverse HCT reaction in lignin biosynthesis. Loss of function of HCT gives severe growth phenotypes in several dicot plants, but less so in some monocots, questioning whether this enzyme, and therefore the shikimate shunt, plays the same role in both monocots and dicots. The model grass Brachypodium distachyon has two HCT genes, but lacks a classical CSE gene. This study was therefore conducted to evaluate the utility of HCT as a target for lignin modification in a species with an “incomplete” shikimate shunt.Results: The kinetic properties of recombinant B. distachyon HCTs were compared with those from Arabidopsis thaliana, Medicago truncatula, and Panicum virgatum (switchgrass) for both the forward and reverse reactions. Along with two M. truncatula HCTs, B. distachyon HCT2 had the least kinetically unfavorable reverse HCT reaction, and this enzyme is induced when HCT1 is down-regulated. Down regulation of B. distachyon HCT1, or co-down-regulation of HCT1 and HCT2, by RNA interference led to reduced lignin levels, with only modest changes in lignin composition and molecular weight.Conclusions: Down-regulation of HCT1, or co-down-regulation of both HCT genes, in B. distachyon results in less extensive changes in lignin content/composition and cell wall structure than observed following HCT down-regulation in dicots, with little negative impact on biomass yield. Nevertheless, HCT down-regulation leads to significant improvements in biomass saccharification efficiency, making this gene a preferred target for biotechnological improvement of grasses for bioprocessing.

Research Organization:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
Center for Bioenergy Innovation; AC05-00OR22725
OSTI ID:
1768106
Alternate ID(s):
OSTI ID: 1787575; OSTI ID: 1797629
Journal Information:
Biotechnology for Biofuels, Journal Name: Biotechnology for Biofuels Vol. 14 Journal Issue: 1; ISSN 1754-6834
Publisher:
Springer Science + Business MediaCopyright Statement
Country of Publication:
Netherlands
Language:
English

References (43)

Tricin, a Flavonoid Monomer in Monocot Lignification journal February 2015
Agronomic Performance and Lignin Content of HCT Down-Regulated Alfalfa (Medicago sativa L.) journal May 2018
The Growth Reduction Associated with Repressed Lignin Biosynthesis in Arabidopsis thaliana Is Independent of Flavonoids journal May 2010
The Arabidopsis REF8 gene encodes the 3-hydroxylase of phenylpropanoid metabolism journal April 2002
Developmental Control of Lignification in Stems of Lowland Switchgrass Variety Alamo and the Effects on Saccharification Efficiency journal October 2009
NMR Characterization of C3H and HCT Down-Regulated Alfalfa Lignin journal October 2009
Lignin modification improves fermentable sugar yields for biofuel production journal June 2007
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0 journal March 2010
Isolation and functional characterization of a cDNA coding a hydroxycinnamoyltransferase involved in phenylpropanoid biosynthesis in Cynara cardunculus L journal January 2007
Role of bifunctional ammonia-lyase in grass cell wall biosynthesis journal May 2016
Modifying lignin to improve bioenergy feedstocks: strengthening the barrier against pathogens?† journal January 2013
New insights into the molecular architecture of hardwood lignins by chemical degradative methods journal March 1995
Disrupting the cinnamyl alcohol dehydrogenase 1 gene ( BdCAD1 ) leads to altered lignification and improved saccharification in Brachypodium distachyon journal December 2012
Suppression of a single BAHD gene in Setaria viridis causes large, stable decreases in cell wall feruloylation and increases biomass digestibility journal January 2018
Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis journal August 2013
Exploiting the Substrate Promiscuity of Hydroxycinnamoyl-CoA:Shikimate Hydroxycinnamoyl Transferase to Reduce Lignin journal February 2016
Should I stay or should I go: are chlorogenic acids mobilized towards lignin biosynthesis? journal October 2019
Down-regulation of hydroxycinnamoyl CoA: Shikimate hydroxycinnamoyl transferase in transgenic alfalfa affects lignification, development and forage quality journal June 2007
Dynamic Conformational States Dictate Selectivity toward the Native Substrate in a Substrate-Permissive Acyltransferase journal November 2016
Gateway-compatible vectors for high-throughput gene functional analysis in switchgrass (Panicum virgatum L.) and other monocot species: Gateway-compatible vectors for monocot transformation journal September 2011
Downregulation of p‐ COUMAROYL ESTER 3‐ HYDROXYLASE in rice leads to altered cell wall structures and improves biomass saccharification journal July 2018
RNAi downregulation of three key lignin genes in sugarcane improves glucose release without reduction in sugar production journal December 2016
The biosynthesis of monolignols: a “metabolic grid”, or independent pathways to guaiacyl and syringyl units? journal August 2001
Purification, Cloning, and Properties of an Acyltransferase Controlling Shikimate and Quinate Ester Intermediates in Phenylpropanoid Metabolism journal October 2002
Development and use of a switchgrass (Panicum virgatum L.) transformation pipeline by the BioEnergy Science Center to evaluate plants for reduced cell wall recalcitrance journal December 2017
Targeted down-regulation of cytochrome P450 enzymes for forage quality improvement in alfalfa (Medicago sativa L.) journal November 2005
Statistical significance of quantitative PCR journal January 2007
Rewriting the lignin roadmap journal June 2002
Increase in 4-Coumaryl Alcohol Units during Lignification in Alfalfa ( Medicago sativa ) Alters the Extractability and Molecular Weight of Lignin journal October 2010
Chemical Syntheses and Properties of Hydroxycinnamoyl- Coenzyme A Derivatives journal June 1975
4-Coumarate 3-hydroxylase in the lignin biosynthesis pathway is a cytosolic ascorbate peroxidase journal April 2019
Thioacidolysis of Lignin: Comparison with Acidolysis journal January 1985
Lignins and Ferulate−Coniferyl Alcohol Cross-Coupling Products in Cereal Grains journal October 2004
Colorimetric Method for Determination of Sugars and Related Substances journal March 1956
Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon journal June 2017
Silencing CAFFEOYL SHIKIMATE ESTERASE Affects Lignification and Improves Saccharification in Poplar journal September 2017
Development and commercialization of reduced lignin alfalfa journal April 2019
An essential role of caffeoyl shikimate esterase in monolignol biosynthesis in Medicago truncatula journal June 2016
A Genomics Approach to Deciphering Lignin Biosynthesis in Switchgrass journal November 2013
Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin in Populus trichocarpa journal March 2014
Functional characterization of cinnamyl alcohol dehydrogenase and caffeic acid O-methyltransferase in Brachypodium distachyon journal January 2013
Silencing of Hydroxycinnamoyl-Coenzyme A Shikimate/Quinate Hydroxycinnamoyltransferase Affects Phenylpropanoid Biosynthesis journal May 2004
Ectopic Defense Gene Expression Is Associated with Growth Defects in Medicago truncatula Lignin Pathway Mutants journal July 2019