Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

How μ-opioid receptor recognizes fentanyl

Journal Article · · Nature Communications
Abstract

Roughly half of the drug overdose-related deaths in the United States are related to synthetic opioids represented by fentanyl which is a potent agonist of mu-opioid receptor (mOR). In recent years, X-ray crystal structures of mOR in complex with morphine derivatives have been determined; however, structural basis of mOR activation by fentanyl-like opioids remains lacking. Exploiting the X-ray structure of BU72-bound mOR and several molecular simulation techniques, we elucidated the detailed binding mechanism of fentanyl. Surprisingly, in addition to the salt-bridge binding mode common to morphinan opiates, fentanyl can move deeper and form a stable hydrogen bond with the conserved His297 6.52 , which has been suggested to modulate mOR’s ligand affinity and pH dependence by previous mutagenesis experiments. Intriguingly, this secondary binding mode is only accessible when His297 6.52 adopts a neutral HID tautomer. Alternative binding modes may represent a general mechanism in G protein-coupled receptor-ligand recognition.

Research Organization:
Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN (United States)
Sponsoring Organization:
National Institutes of Health (NIH); USDOE; USDOE Office of Science (SC)
Grant/Contract Number:
SC0014664
OSTI ID:
1765423
Alternate ID(s):
OSTI ID: 1816756
Journal Information:
Nature Communications, Journal Name: Nature Communications Journal Issue: 1 Vol. 12; ISSN 2041-1723
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (62)

Hydrophilicity of cavities in proteins journal April 1996
The Role of Water and Sodium Ions in the Activation of the μ-Opioid Receptor journal July 2013
Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations journal August 2004
CHARMM: The biomolecular simulation program journal July 2009
Progress in the prediction of pKa values in proteins journal October 2011
Molecular dynamics of fentanyl bound to μ-opioid receptor journal May 2019
Pharmacological profiles of fentanyl analogs at μ, δ and κ opiate receptors journal March 1992
An Implicit Membrane Generalized Born Theory for the Study of Structure, Stability, and Interactions of Membrane Proteins journal November 2003
Weighted-ensemble Brownian dynamics simulations for protein association reactions journal January 1996
-mu opiate receptor. Charged transmembrane domain amino acids are critical for agonist recognition and intrinsic activity. journal August 1994
μ Opioid receptor: role for the amino terminus as a determinant of ligand binding affinity journal March 2000
[19] Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations in G protein-coupled receptors book January 1995
POVME: An algorithm for measuring binding-pocket volumes journal February 2011
Fentanyl: Receptor pharmacology, abuse potential, and implications for treatment journal November 2019
Intracellular Transfer of Na+ in an Active-State G-Protein-Coupled Receptor journal January 2018
Allosteric sodium in class A GPCR signaling journal May 2014
Uniform assessment and ranking of opioid Mu receptor binding constants for selected opioid drugs journal April 2011
How Oliceridine (TRV-130) Binds and Stabilizes a μ-Opioid Receptor Conformational State That Selectively Triggers G Protein Signaling Pathways journal November 2016
CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field journal December 2015
All-Atom Continuous Constant pH Molecular Dynamics With Particle Mesh Ewald and Titratable Water journal October 2016
Further along the Road Less Traveled: AMBER ff15ipq, an Original Protein Force Field Built on a Self-Consistent Physical Model journal July 2016
Constant pH Molecular Dynamics Reveals How Proton Release Drives the Conformational Transition of a Transmembrane Efflux Pump journal November 2017
Conformational Activation of a Transmembrane Proton Channel from Constant pH Molecular Dynamics journal September 2016
DARK Classics in Chemical Neuroscience: Fentanyl journal January 2018
β-Fluorofentanyls Are pH-Sensitive Mu Opioid Receptor Agonists journal August 2019
Automation of the CHARMM General Force Field (CGenFF) II: Assignment of Bonded Parameters and Partial Atomic Charges journal November 2012
Chemical Similarity Searching journal November 1998
Efficient Explicit-Solvent Molecular Dynamics Simulations of Molecular Association Kinetics: Methane/Methane, Na + /Cl , Methane/Benzene, and K + /18-Crown-6 Ether journal February 2011
Continuous Constant pH Molecular Dynamics in Explicit Solvent with pH-Based Replica Exchange journal July 2011
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ 1 and χ 2 Dihedral Angles journal August 2012
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data journal June 2013
Simultaneous Computation of Dynamical and Equilibrium Information Using a Weighted Ensemble of Trajectories journal March 2014
POVME 2.0: An Enhanced Tool for Determining Pocket Shape and Volume Characteristics journal October 2014
WESTPA: An Interoperable, Highly Scalable Software Package for Weighted Ensemble Simulation and Analysis journal January 2015
Molecular Docking Reveals a Novel Binding Site Model for Fentanyl at the μ-Opioid Receptor journal February 2000
Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types journal June 2010
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins journal April 1998
Solubility Behavior of Narcotic Analgesics in Aqueous Media: Solubilities and Dissociation Constants of Morphine, Fentanyl, and Sufentanil journal January 1989
Crystal structure of the µ-opioid receptor bound to a morphinan antagonist journal March 2012
Structural insights into µ-opioid receptor activation journal August 2015
Measurement of the millisecond activation switch of G protein–coupled receptors in living cells journal June 2003
Mechanism of pH-dependent activation of the sodium-proton antiporter NhaA journal October 2016
CHARMM36m: an improved force field for folded and intrinsically disordered proteins journal November 2016
Structure of the µ-opioid receptor–Gi protein complex journal June 2018
Opioid receptor signaling, analgesic and side effects induced by a computationally designed pH-dependent agonist journal June 2018
Exploring a new ligand binding site of G protein-coupled receptors journal January 2018
Key Residues Defining the μ-Opioid Receptor Binding Pocket: A Site-Directed Mutagenesis Study journal January 1997
pKa of Fentanyl Varies With Temperature: Implications for Acid-Base Management During Extremes of Body Temperature journal December 2005
Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems journal June 1993
Alternative proton-binding site and long-distance coupling in Escherichia coli sodium–proton antiporter NhaA journal September 2020
OPM database and PPM web server: resources for positioning of proteins in membranes journal September 2011
Continuous constant pH Molecular Dynamics Simulations of Transmembrane Proteins posted_content August 2020
pK values of the ionizable groups of proteins journal May 2006
Modulation of μ‐opioid receptor activation by acidic pH is dependent on ligand structure and an ionizable amino acid residue journal December 2019
Structure-Activity Studies of Fentanyl journal September 1988
A nontoxic pain killer designed by modeling of pathological receptor conformations journal March 2017
Weighted Ensemble Simulation: Review of Methodology, Applications, and Software journal May 2017
Basic opioid pharmacology: an update journal February 2012
Structural Determinants for the Binding of Morphinan Agonists to the μ-Opioid Receptor journal August 2015
Predicting opioid receptor binding affinity of pharmacologically unclassified designer substances using molecular docking journal May 2018
Fentanyl Family at the Mu-Opioid Receptor: Uniform Assessment of Binding and Computational Analysis journal February 2019
Fentanyl-related compounds and derivatives: current status and future prospects for pharmaceutical applications journal March 2014

Similar Records

Stereoselective recognition of morphine enantiomers by μ-opioid receptor
Journal Article · Sun Jan 21 19:00:00 EST 2024 · National Science Review · OSTI ID:2320350

Crystal structure of the[mu]-opioid receptor bound to a morphinan antagonist
Journal Article · Tue Jun 26 20:00:00 EDT 2012 · Nature · OSTI ID:1043732