Rising to the challenge: accelerated pace of discovery transforms marine virology
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journal
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February 2015 |
CheckV: assessing the quality of metagenome-assembled viral genomes
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preprint
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May 2020 |
Recombination between RNA viruses and plasmids might have played a central role in the origin and evolution of small DNA viruses
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journal
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August 2012 |
Discovery of several thousand highly diverse circular DNA viruses
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February 2021 |
Host-linked soil viral ecology along a permafrost thaw gradient
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journal
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July 2018 |
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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journal
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August 2017 |
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
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journal
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May 2019 |
Metagenome-wide association studies: fine-mining the microbiome
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journal
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July 2016 |
Phage puppet masters of the marine microbial realm
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journal
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June 2018 |
Expansion of known ssRNA phage genomes: From tens to over a thousand
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journal
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February 2020 |
Dynamic genome evolution and complex virocell metabolism of globally-distributed giant viruses
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journal
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April 2020 |
Global Organization and Proposed Megataxonomy of the Virus World
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journal
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March 2020 |
Patterns and ecological drivers of ocean viral communities
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journal
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May 2015 |
Prophages and bacterial genomics: what have we learned so far?: Prophage genomics
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journal
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June 2003 |
Dynamic Genome Evolution and Blueprint of Complex Virocell Metabolism in Globally-Distributed Giant Viruses
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posted_content
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January 2019 |
Snakemake--a scalable bioinformatics workflow engine
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journal
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August 2012 |
Marine DNA Viral Macro- and Microdiversity from Pole to Pole
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journal
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May 2019 |
VIBRANT: Automated recovery, annotation and curation of microbial viruses, and evaluation of virome function from genomic sequences
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posted_content
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November 2019 |
Putative archaeal viruses from the mesopelagic ocean
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journal
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January 2017 |
The Promises and Pitfalls of Machine Learning for Detecting Viruses in Aquatic Metagenomes
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journal
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April 2019 |
Bioconda: sustainable and comprehensive software distribution for the life sciences
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journal
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July 2018 |
PHASTER: a better, faster version of the PHAST phage search tool
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journal
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May 2016 |
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
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journal
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September 2016 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
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journal
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March 2010 |
VirSorter: mining viral signal from microbial genomic data
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journal
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January 2015 |
Diversity, evolution, and classification of virophages uncovered through global metagenomics
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journal
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December 2019 |
Embracing the unknown: disentangling the complexities of the soil microbiome
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journal
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August 2017 |
Minimum Information about an Uncultivated Virus Genome (MIUViG)
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journal
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December 2018 |
Viruses, plasmids and other genetic elements of thermophilic and hyperthermophilic Archaea
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journal
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May 1996 |
Cressdnaviricota : a Virus Phylum Unifying Seven Families of Rep-Encoding Viruses with Single-Stranded, Circular DNA Genomes
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journal
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April 2020 |
Shotgun metagenomics, from sampling to analysis
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journal
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September 2017 |
A Curated, Comprehensive Database of Plasmid Sequences
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journal
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January 2019 |
Viromes, Not Gene Markers, for Studying Double-Stranded DNA Virus Communities
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journal
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December 2014 |
Uncovering Earth’s virome
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journal
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August 2016 |
Plasmids, viruses and virus-like membrane vesicles from Thermococcales
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journal
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January 2011 |
Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences
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journal
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October 2006 |
Going viral: next-generation sequencing applied to phage populations in the human gut
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journal
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August 2012 |
Viral metagenomics
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journal
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May 2005 |
Contemporary Phage Biology: From Classic Models to New Insights
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journal
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March 2018 |
The Pfam protein families database in 2019
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journal
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October 2018 |
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
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journal
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May 2012 |
The evolutionary history of vertebrate RNA viruses
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journal
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April 2018 |
Are There 10 31 Virus Particles on Earth, or More, or Fewer?
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journal
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February 2020 |
Accelerated Profile HMM Searches
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journal
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October 2011 |
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
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journal
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October 2017 |
IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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journal
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November 2018 |
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
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journal
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July 2017 |
Identifying viruses from metagenomic data using deep learning
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journal
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January 2020 |
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
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journal
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November 2015 |
Prophinder: a computational tool for prophage prediction in prokaryotic genomes
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journal
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January 2008 |
MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins
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journal
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August 2018 |
Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
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journal
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October 2017 |
The ancestral and industrialized gut microbiota and implications for human health
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journal
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May 2019 |
Detecting overlapping protein complexes in protein-protein interaction networks
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journal
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March 2012 |
From deep sequencing to viral tagging: Recent advances in viral metagenomics: Prospects & Overviews
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journal
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March 2013 |
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
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journal
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July 2019 |
Geminiviruses: a tale of a plasmid becoming a virus
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journal
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January 2009 |
Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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journal
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July 2015 |
Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
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journal
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October 2017 |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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journal
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March 2004 |
Soil Viruses: A New Hope
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journal
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May 2019 |
PHAST: A Fast Phage Search Tool
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journal
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June 2011 |
Giant virus diversity and host interactions through global metagenomics
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journal
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January 2020 |
Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage
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journal
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March 1999 |
The Microbial Engines That Drive Earth's Biogeochemical Cycles
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journal
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May 2008 |
HH-suite3 for fast remote homology detection and deep protein annotation
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journal
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September 2019 |
Redefining the invertebrate RNA virosphere
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journal
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November 2016 |