KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

Reese, Justin T.; Unni, Deepak; Callahan, Tiffany J.; Cappelletti, Luca; Ravanmehr, Vida; Carbon, Seth; Shefchek, Kent A.; Good, Benjamin M.; Balhoff, James P.; Fontana, Tommaso; Blau, Hannah; Matentzoglu, Nicolas; Harris, Nomi L.; Munoz-Torres, Monica C.; Haendel, Melissa A.; Robinson, Peter N.; Joachimiak, Marcin P.; Mungall, Christopher J.

doi:10.1016/j.patter.2020.100155

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

Journal Article · Thu Dec 31 23:00:00 EST 2020 · Patterns

DOI:https://doi.org/10.1016/j.patter.2020.100155· OSTI ID:1759078

; Unni, Deepak; ; ; Ravanmehr, Vida; ; Shefchek, Kent A.; ; ; ; ; ; ; Munoz-Torres, Monica C.; Haendel, Melissa A.; Robinson, Peter N.; Joachimiak, Marcin P.;

Not Available

View Journal Article

Sponsoring Organization:: USDOE

OSTI ID:: 1759078

Alternate ID(s):: OSTI ID: 1826905

Journal Information:: Patterns, Journal Name: Patterns Journal Issue: 1 Vol. 2; ISSN 2666-3899

Publisher:: ElsevierCopyright Statement

Country of Publication:: United States

Language:: English

References (20)

The Human Phenotype Ontology: A Tool for Annotating and Analyzing Human Hereditary Disease Robinson, Peter N.; Köhler, Sebastian; Bauer, Sebastian The American Journal of Human Genetics, Vol. 83, Issue 5 https://doi.org/10.1016/j.ajhg.2008.09.017	journal	November 2008
Association between COVID-19 and cardiovascular disease Srivastava, Kamna IJC Heart & Vasculature, Vol. 29 https://doi.org/10.1016/j.ijcha.2020.100583	journal	August 2020
SARS and MERS: recent insights into emerging coronaviruses de Wit, Emmie; van Doremalen, Neeltje; Falzarano, Darryl Nature Reviews Microbiology, Vol. 14, Issue 8 https://doi.org/10.1038/nrmicro.2016.81	journal	June 2016
Network-based drug repurposing for novel coronavirus 2019-nCoV/SARS-CoV-2 Zhou, Yadi; Hou, Yuan; Shen, Jiayu Cell Discovery, Vol. 6, Issue 1 https://doi.org/10.1038/s41421-020-0153-3	journal	March 2020
The art of using t-SNE for single-cell transcriptomics Kobak, Dmitry; Berens, Philipp Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-13056-x	journal	November 2019
Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems Thomas, Paul D.; Hill, David P.; Mi, Huaiyu Nature Genetics, Vol. 51, Issue 10 https://doi.org/10.1038/s41588-019-0500-1	journal	September 2019
Mild or Moderate Covid-19 Gandhi, Rajesh T.; Lynch, John B.; del Rio, Carlos New England Journal of Medicine, Vol. 383, Issue 18 https://doi.org/10.1056/NEJMcp2009249	journal	October 2020
Severe Covid-19 Berlin, David A.; Gulick, Roy M.; Martinez, Fernando J. New England Journal of Medicine, Vol. 383, Issue 25 https://doi.org/10.1056/NEJMcp2009575	journal	December 2020
Remdesivir for the Treatment of Covid-19 — Final Report Beigel, John H.; Tomashek, Kay M.; Dodd, Lori E. New England Journal of Medicine, Vol. 383, Issue 19 https://doi.org/10.1056/NEJMoa2007764	journal	November 2020
TTD: Therapeutic Target Database Chen, X. Nucleic Acids Research, Vol. 30, Issue 1 https://doi.org/10.1093/nar/30.1.412	journal	January 2002
ChEMBL: a large-scale bioactivity database for drug discovery Gaulton, A.; Bellis, L. J.; Bento, A. P. Nucleic Acids Research, Vol. 40, Issue D1 https://doi.org/10.1093/nar/gkr777	journal	September 2011
The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases Orchard, Sandra; Ammari, Mais; Aranda, Bruno Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1115	journal	November 2013
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species Mungall, Christopher J.; McMurry, Julie A.; Köhler, Sebastian Nucleic Acids Research, Vol. 45, Issue D1 https://doi.org/10.1093/nar/gkw1128	journal	November 2016
DrugCentral: online drug compendium Ursu, Oleg; Holmes, Jayme; Knockel, Jeffrey Nucleic Acids Research, Vol. 45, Issue D1 https://doi.org/10.1093/nar/gkw993	journal	October 2016
The Gene Ontology Resource: 20 years and still GOing strong No authors listed Nucleic Acids Research, Vol. 47, Issue D1, p. D330-D338 https://doi.org/10.1093/nar/gky1055	journal	November 2018
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets Szklarczyk, Damian; Gable, Annika L.; Lyon, David Nucleic Acids Research, Vol. 47, Issue D1 https://doi.org/10.1093/nar/gky1131	journal	November 2018
DrugCentral 2018: an update Ursu, Oleg; Holmes, Jayme; Bologa, Cristian G. Nucleic Acids Research, Vol. 47, Issue D1 https://doi.org/10.1093/nar/gky963	journal	October 2018
A Review of Relational Machine Learning for Knowledge Graphs Nickel, Maximilian; Murphy, Kevin; Tresp, Volker Proceedings of the IEEE, Vol. 104, Issue 1 https://doi.org/10.1109/JPROC.2015.2483592	journal	January 2016
Relations in biomedical ontologies Smith, Barry; Ceusters, Werner; Klagges, Bert Genome Biology, Vol. 6, Issue 5, p. R46 https://doi.org/10.1186/gb-2005-6-5-r46	journal	January 2005
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data McMurry, Julie A.; Juty, Nick; Blomberg, Niklas PLOS Biology, Vol. 15, Issue 6 https://doi.org/10.1371/journal.pbio.2001414	journal	June 2017

Similar Records

Visual Understanding of COVID-19 Knowledge Graph for Predictive Analysis

Conference · Tue Nov 30 23:00:00 EST 2021 · OSTI ID:1883954

KG-Hub—building and exchanging biological knowledge graphs

Journal Article · Fri Jun 30 00:00:00 EDT 2023 · Bioinformatics · OSTI ID:2234091

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

Citation Formats

References (20)

Similar Records

Related Subjects