2020 Multiscale Microbial Dynamics Modeling Course

Dataset · Tue Dec 01 04:00:00 EST 2020

DOI:https://doi.org/10.25982/1722943· OSTI ID:1722943

Dow, Ellen G ^[1]; Wood-Charlson, Elisha M ^[2]; Hess, Nancy ^[3]; Scheibe, Timothy ^[3]

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1. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); KBase
2. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
3. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

The 2020 Multiscale Microbial Dynamics course is adapted from the virtual 2020 Mutliscale Microbial Dynamics Summer School that was hosted by Environmental Molecular Sciences Laboratory (EMSL), a U.S. Department of Energy (DOE) science user facility located on the Pacific Northwest National Laboratory (PNNL) campus, in collaboration with the Joint Genome Institute (JGI) and the DOE Systems Biology Knowledgebase (KBase). The course course covers how to incorporate microbial metagenomic and environmental metabolite data from watershed ecosystems into metabolic and community modeling using computational frameworks, such as KBase and PFLOTRAN. The curriculum includes lectures and software and data analysis tutorials. All materials are freely accessible to the community as part of the 2020 Microbial Dynamics Summer School Organization in KBase.

• Research Organization: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); DOE Systems Biology Knowledgebase (KBase); Environmental Molecular Sciences Laboratory (EMSL), Richland, WA (United States); Pacific Northwest National Laboratory (PNNL), Richland, WA (United States); Joint Genome Institute (JGI), Berkeley, CA (United States)
• Sponsoring Organization: USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
• Contributing Organization: Worldwide Hydrobiogeochemical Observation Network for Dynamic River Systems (WHONDRS); DOE Environmental Systems Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE); Subsurface Biogeochemical Research (SBR)
• DOE Contract Number: AC02-05CH11231; AC05-76RL01830; AC02-05CH11231
• OSTI ID: 1722943
• Country of Publication: United States
• Language: English

Related Subjects

54 ENVIRONMENTAL SCIENCES
96 KNOWLEDGE MANAGEMENT AND PRESERVATION
data analysis
data science
metabolic modeling
metabolomic
metagenomic
microbial community
reactive transport model
watershed ecosystem