PhycoCosm, a comparative algal genomics resource

Grigoriev, Igor V.; Hayes, Richard D.; Calhoun, Sara; Kamel, Bishoy; Wang, Alice; Ahrendt, Steven; Dusheyko, Sergey; Nikitin, Roman; Mondo, Stephen J.; Salamov, Asaf; Shabalov, Igor; Kuo, Alan

doi:10.1093/nar/gkaa898

PhycoCosm, a comparative algal genomics resource

Journal Article · Mon Oct 26 00:00:00 EDT 2020 · Nucleic Acids Research

DOI:https://doi.org/10.1093/nar/gkaa898· OSTI ID:1686251

^[1]; ^[2]; ^[3]; ^[3]; Wang, Alice ^[4]; ^[2]; Dusheyko, Sergey ^[2]; Nikitin, Roman ^[2]; ^[2]; ^[2]; Shabalov, Igor ^[2]; ^[2]

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA, Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA

Abstract

Algae are a diverse, polyphyletic group of photosynthetic eukaryotes spanning nearly all eukaryotic lineages of life and collectively responsible for ∼50% of photosynthesis on Earth. Sequenced algal genomes, critical to understanding their complex biology, are growing in number and require efficient tools for analysis. PhycoCosm (https://phycocosm.jgi.doe.gov) is an algal multi-omics portal, developed by the US Department of Energy Joint Genome Institute to support analysis and distribution of algal genome sequences and other ‘omics’ data. PhycoCosm provides integration of genome sequence and annotation for >100 algal genomes with available multi-omics data and interactive web-based tools to enable algal research in bioenergy and the environment, encouraging community engagement and data exchange, and fostering new sequencing projects that will further these research goals.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE; USDOE Office of Science (SC), Biological and Environmental Research (BER), Biological Systems Science Division

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1686251

Alternate ID(s):: OSTI ID: 1713307

Journal Information:: Nucleic Acids Research, Journal Name: Nucleic Acids Research; ISSN 0305-1048

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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