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In Vivo Molecular Insights into Syntrophic Geobacter Aggregates

Journal Article · · Analytical Chemistry
 [1];  [2];  [3];  [4];  [5];  [2]
  1. Chinese Academy of Sciences (CAS), Yantai (China). Yantai Inst. of Coastal Zone Research; Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Energy and Environment Directorate; Univ. of Chinese Academy of Sciences, Beijing (China)
  2. Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Energy and Environment Directorate
  3. Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Sciences Lab. (EMSL)
  4. Grand View Univ., Des Moines, IA (United States). Dept. of Chemistry
  5. Chinese Academy of Sciences (CAS), Yantai (China). Yantai Inst. of Coastal Zone Research
Direct interspecies electron transfer (DIET) has been considered as a novel and highly efficient strategy in both natural anaerobic environments and artificial microbial fuel cells. A syntrophic model consisting of Geobacter metallireducens and Geobacter sulfurreducens was studied in this work. We conducted in vivo molecular mapping of the outer surface of the syntrophic community as the interface of nutrients and energy exchange. System for Analysis at the Liquid Vacuum Interface combined with time-of-flight secondary ion mass spectrometry was employed to capture the molecular distribution of syntrophic Geobacter communities in the living and hydrated state. Principal component analysis with selected peaks revealed that syntrophic Geobacter aggregates were well differentiated from other control samples, including syntrophic planktonic cells, pure cultured planktonic cells, and single population biofilms. Our in vivo imaging indicated that a unique molecular surface was formed. Specifically, aromatic amino acids, phosphatidylethanolamine components, and large water clusters were identified as key components that favored the DIET of syntrophic Geobacter aggregates. Moreover, the molecular changes in depths of the Geobacter aggregates were captured using dynamic depth profiling. Our findings shed new light on the interface components supporting electron transfer in syntrophic communities based on in vivo molecular imaging.
Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
National Natural Science Foundation of China (NNSFC); USDOE Laboratory Directed Research and Development (LDRD) Program
Grant/Contract Number:
AC05-76RL01830
OSTI ID:
1673583
Report Number(s):
PNNL-SA--151938
Journal Information:
Analytical Chemistry, Journal Name: Analytical Chemistry Journal Issue: 15 Vol. 92; ISSN 0003-2700
Publisher:
American Chemical Society (ACS)Copyright Statement
Country of Publication:
United States
Language:
English

References (76)

Characterization of adsorbed protein films by time of flight secondary ion mass spectrometry journal January 2001
DNA sequencing with ToF-SIMS journal January 2002
Development of chain-folding of semicrystalline polymers in thin films: a combined ToF-SIMS and PCA analysis: Development of chain-folding of semicrystalline polymers in thin films journal May 2010
ToF-SIMS analysis of a polymer microarray composed of poly(meth)acrylates with C 6 derivative pendant groups: ToF-SIMS analysis of a poly(meth)acrylate microarray journal February 2016
Conductive Composite Materials Fabricated from Microbially Produced Protein Nanowires journal September 2018
Protein films adsorbed on experimental dental materials: ToF-SIMS with multivariate data analysis journal March 2008
Polar lipid fatty acids, LPS-hydroxy fatty acids, and respiratory quinones of three Geobacter strains, and variation with electron acceptor journal October 2008
Double protein functionalized poly-ε-caprolactone surfaces: in depth ToF–SIMS and XPS characterization journal December 2011
Improving the Molecular Ion Signal Intensity for In Situ Liquid SIMS Analysis journal September 2016
Multivariate Analysis of ToF-SIMS Data from Multicomponent Systems: The Why, When, and How journal December 2012
Information from complexity: Challenges of TOF-SIMS data interpretation journal July 2006
Lipid imaging with time-of-flight secondary ion mass spectrometry (ToF-SIMS) journal November 2011
Impact of the biofilm mode of growth on the inner membrane phospholipid composition and lipid domains in Pseudomonas aeruginosa journal January 2011
The gastrointestinal microbiota and its role in oncogenesis journal December 2017
Occurrence of hopanoid lipids in anaerobic Geobacter species journal February 2005
Biomarker imaging of single diatom cells in a microbial mat using time-of-flight secondary ion mass spectrometry (ToF-SIMS) journal April 2013
TOF-SIMS 3D Biomolecular Imaging of Xenopus laevis Oocytes Using Buckminsterfullerene (C 60 ) Primary Ions journal March 2007
Quantitative Analysis of Surface-Immobilized Protein by TOF-SIMS: Effects of Protein Orientation and Trehalose Additive journal February 2007
A New Method and Mass Spectrometer Design for TOF-SIMS Parallel Imaging MS/MS journal May 2016
In Situ Molecular Imaging of the Biofilm and Its Matrix journal October 2016
In Situ Liquid Secondary Ion Mass Spectrometry: A Surprisingly Soft Ionization Process for Investigation of Halide Ion Hydration journal April 2019
Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili journal May 2019
Spatially Resolved Chemical Analysis of Geobacter sulfurreducens Cell Surface journal March 2019
Fluorescence, XPS, and TOF-SIMS Surface Chemical State Image Analysis of DNA Microarrays journal August 2007
Time-of-Flight Secondary Ion Mass Spectrometry Investigation of the Orientation of Adsorbed Antibodies on SAMs Correlated to Biorecognition Tests journal January 2014
Time-of-Flight Secondary Ion Mass Spectrometry Analysis of Conformational Changes in Adsorbed Protein Films journal May 2002
Probing the Orientation of Surface-Immobilized Protein G B1 Using ToF-SIMS, Sum Frequency Generation, and NEXAFS Spectroscopy journal November 2010
Detecting the Presence of Denatured Human Serum Albumin in an Adsorbed Protein Monolayer Using TOF−SIMS journal June 2010
Extracellular electron transfer via microbial nanowires journal June 2005
Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association journal November 2013
Visualization of charge propagation along individual pili proteins using ambient electrostatic force microscopy journal October 2014
In situ molecular imaging of adsorbed protein films in water indicating hydrophobicity and hydrophilicity journal February 2020
Lipid cartography of atherosclerotic plaque by cluster-TOF-SIMS imaging journal January 2007
In situ molecular imaging of a hydrated biofilm in a microfluidic reactor by ToF-SIMS journal January 2014
Deciphering the aqueous chemistry of glyoxal oxidation with hydrogen peroxide using molecular imaging journal January 2017
Molecular evidence of a toxic effect on a biofilm and its matrix journal January 2019
Probing liquid surfaces under vacuum using SEM and ToF-SIMS journal January 2011
Promoting direct interspecies electron transfer with activated carbon journal January 2012
Performance of a microfluidic device for in situ ToF-SIMS analysis of selected organic molecules at aqueous surfaces journal January 2013
Chemical imaging of molecular changes in a hydrated single cell by dynamic secondary ion mass spectrometry and super-resolution microscopy journal April 2016
Perspective: Water cluster mediated atmospheric chemistry journal July 2011
Two-dimensional and three-dimensional dynamic imaging of live biofilms in a microchannel by time-of-flight secondary ion mass spectrometry journal May 2015
Microbial interspecies electron transfer via electric currents through conductive minerals journal June 2012
Characterization and Proteomic Analysis of Geobacter sulfurreducens PCA under Long-Term Electron-Donor Starvation journal November 2015
Metabolome and proteome changes between biofilm and planktonic phenotypes of the marine bacterium Pseudoalteromonas lipolytica TC8 journal January 2018
Magnetite compensates for the lack of a pilin-associated c -type cytochrome in extracellular electron exchange : Magnetite compensates for the lack of OmcS journal May 2014
Evidence for the coexistence of direct and riboflavin‐mediated interspecies electron transfer in Geobacter co‐culture journal November 2019
A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution: Adaptive evolution and extracellular electron transfer journal July 2010
Small molecule analysis and imaging of fatty acids in the zebra finch song system using time-of-flight-secondary ion mass spectrometry: ToF-SIMS analysis of the zebra finch brain journal May 2011
Specific localization of the c-type cytochrome OmcZ at the anode surface in current-producing biofilms of Geobacter sulfurreducens: c-type cytochrome accumulates at the electrode surface journal August 2010
TOF-SIMS imaging of adsorbed proteins on topographically complex surfaces with Bi 3 + primary ions journal September 2011
Making a hybrid microfluidic platform compatible for in situ imaging by vacuum-based techniques journal November 2011
Assessment of different sample preparation routes for mass spectrometric monitoring and imaging of lipids in bone cells via ToF-SIMS journal March 2015
Lipid specific molecular ion emission as a function of the primary ion characteristics in TOF-SIMS
  • Adams, Kendra J.; DeBord, John Daniel; Fernandez-Lima, Francisco
  • Journal of Vacuum Science & Technology B, Nanotechnology and Microelectronics: Materials, Processing, Measurement, and Phenomena, Vol. 34, Issue 5 https://doi.org/10.1116/1.4961461
journal September 2016
Characterization of syntrophic Geobacter communities using ToF-SIMS journal December 2017
Peak selection matters in principal component analysis: A case study of syntrophic microbes journal September 2019
Observation of Large Water-Cluster Anions with Surface-Bound Excess Electrons journal January 2005
Direct Exchange of Electrons Within Aggregates of an Evolved Syntrophic Coculture of Anaerobic Bacteria journal December 2010
Alignment of the c-Type Cytochrome OmcS along Pili of Geobacter sulfurreducens journal April 2010
Direct Interspecies Electron Transfer between Geobacter metallireducens and Methanosarcina barkeri journal May 2014
Imaging Hydrated Microbial Extracellular Polymers: Comparative Analysis by Electron Microscopy journal December 2010
Role of Geobacter sulfurreducens Outer Surface c-Type Cytochromes in Reduction of Soil Humic Acid and Anthraquinone-2,6-Disulfonate journal February 2010
A Geobacter sulfurreducens Strain Expressing Pseudomonas aeruginosa Type IV Pili Localizes OmcS on Pili but Is Deficient in Fe(III) Oxide Reduction and Current Production journal December 2013
Aromatic Amino Acids Required for Pili Conductivity and Long-Range Extracellular Electron Transport in Geobacter sulfurreducens journal March 2013
Geobacter Strains Expressing Poorly Conductive Pili Reveal Constraints on Direct Interspecies Electron Transfer Mechanisms journal July 2018
Expressing the Geobacter metallireducens PilA in Geobacter sulfurreducens Yields Pili with Exceptional Conductivity journal January 2017
Limits of detection for time of flight secondary ion mass spectrometry (ToF-SIMS) and X-ray photoelectron spectroscopy (XPS): detection of low amounts of adsorbed protein journal January 2002
Spatiotemporal lipid profiling during early embryo development of Xenopus laevis using dynamic ToF-SIMS imaging journal September 2014
Lipid mapping of colonic mucosa by cluster TOF-SIMS imaging and multivariate analysis in cftr knockout mice journal October 2010
Lipid imaging by gold cluster time-of-flight secondary ion mass spectrometry: application to Duchenne muscular dystrophy journal July 2005
Polymer surface structures determined using ToF-SIMS journal January 2014
Phosphatidylethanolamine-Phosphatidylglycerol Bilayer as a Model of the Inner Bacterial Membrane journal February 2005
Co-occurrence of Methanosarcina mazei and Geobacteraceae in an iron (III)-reducing enrichment culture journal September 2015
Two Modes of Riboflavin-Mediated Extracellular Electron Transfer in Geobacter uraniireducens journal November 2018
In Situ Characterization of Hydrated Proteins in Water by SALVI and ToF-SIMS journal January 2016
Necessity of electrically conductive pili for methanogenesis with magnetite stimulation journal January 2018

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