skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Anaerobic respiration pathways and response to increased substrate availability of Arctic wetland soils

Journal Article · · Environmental Science: Processes & Impacts
DOI:https://doi.org/10.1039/d0em00124d· OSTI ID:1661241

The availability of labile carbon (C) compounds in Arctic wetland soils is expected to increase due to thawing permafrost and increased fermentation as a result of decomposition of organic matter with warming. How microbial communities respond to this change will affect the balance of CO2 and CH4 emitted during anaerobic organic matter decomposition, and ultimately the net radiative forcing of greenhouse gas emissions from these soils. While soil water content limits aerobic respiration, the factors controlling methanogenesis and anaerobic respiration are poorly defined in suboxic Arctic soils. In this study, we conducted incubation experiments on two tundra soils from field sites on the Seward Peninsula, Alaska, with contrasting pH and geochemistry to determine the pathways of anaerobic microbial respiration and changes with increasing substrate availability upon warming. In incubation of soils from the circumneutral Teller site, the ratio of CO2 to CH4 dropped from 10 to <2 after 60 days, indicating rapid depletion of alternative terminal electron acceptors (TEAs). Addition of acetate stimulated production of CO2 and CH4 in a nearly 1:1 ratio, consistent with methanogenesis, and the composition of the microbial community shifted to favor clades capable of utilizing the added acetate such as the Fe(III)-reducing Geobacter and the methanogenic archaea Methanosarcina. In contrast, both CO2 and CH4 production declined with acetate addition during incubation of soils from the more acidic Council site, and fermentative microorganisms increased in abundance despite the high availability of fermentation products. These results demonstrate that the degree to which increasing substrate availability stimulates greenhouse gas production in tundra wetlands will vary widely depending on soil pH and geochemistry.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1661241
Alternate ID(s):
OSTI ID: 1658423
Journal Information:
Environmental Science: Processes & Impacts, Vol. 22, Issue 9; ISSN 2050-7887
Publisher:
Royal Society of ChemistryCopyright Statement
Country of Publication:
United States
Language:
English

References (56)

Direct Interspecies Electron Transfer between Geobacter metallireducens and Methanosarcina barkeri journal May 2014
The specificity of growth inhibition of methanogenic bacteria by bromoethanesulfonate journal December 1987
Methane fluxes in the high northern latitudes for 2005–2013 estimated using a Bayesian atmospheric inversion journal January 2017
Modeling anaerobic soil organic carbon decomposition in Arctic polygon tundra: insights into soil geochemical influences on carbon mineralization journal January 2019
Climate change and the permafrost carbon feedback journal April 2015
Characterization of iron oxide nanoparticle films at the air–water interface in Arctic tundra waters journal August 2018
Organic-matter quality of deep permafrost carbon – a study from Arctic Siberia journal January 2015
Compilation of Henry's law constants (version 4.0) for water as solvent journal January 2015
Adsorption of Sulfate by Kaolinite and Amorphous Iron Oxide in the Presence of Organic Ligands journal July 1989
An Ordination of the Upland Forest Communities of Southern Wisconsin journal February 1957
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing journal December 2012
Intracellular pH of acid-tolerant ruminal bacteria. journal January 1991
Stimulation of anaerobic organic matter decomposition by subsurface organic N addition in tundra soils journal March 2019
Ecosystem and physiological controls over methane production in northern wetlands journal January 1994
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy journal June 2007
Interaction of Carbonate and Organic Anions with Sulfate and Selenate Adsorption on an Aluminum Oxide journal May 2000
Stable carbon isotope fractionation during methanogenesis in three boreal peatland ecosystems journal January 2010
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments journal March 2010
Reduction of iron (III) and humic substances plays a major role in anaerobic respiration in an Arctic peat soil journal January 2010
Biogeochemical modeling of CO 2 and CH 4 production in anoxic Arctic soil microcosms journal January 2016
Trophic links between fermenters and methanogens in a moderately acidic fen soil journal June 2009
FLASH: fast length adjustment of short reads to improve genome assemblies journal September 2011
The effect of permafrost thaw on old carbon release and net carbon exchange from tundra journal May 2009
Pathways of anaerobic organic matter decomposition in tundra soils from Barrow, Alaska: BIOGEOCHEMISTRY OF ANOXIC ARCTIC TUNDRA journal November 2015
Hydrogenotrophic Methanogenesis by Moderately Acid-Tolerant Methanogens of a Methane-Emitting Acidic Peat journal January 2003
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data journal April 2013
Selective Inhibition by 2-Bromoethanesulfonate of Methanogenesis from Acetate in a Thermophilic Anaerobic Digestor journal January 1984
UPARSE: highly accurate OTU sequences from microbial amplicon reads journal August 2013
Anaerobic microbial biogeochemistry in a northern bog: Acetate as a dominant metabolic end product: ANAEROBIC MICROBIAL BIOGEOCHEMISTRY IN A NORTHERN BOG journal October 2002
A thermodynamically-based model for predicting microbial growth and community composition coupled to system geochemistry: Application to uranium bioreduction journal March 2010
Redox properties of standard humic acids journal August 2001
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools journal November 2012
Methanogenesis from acetate: a comparison of the acetate metabolism in Methanothrix soehngenii and Methanosarcina spp. journal June 1992
Methane suppression by iron and humic acids in soils of the Arctic Coastal Plain journal April 2015
Biogenic volatile release from permafrost thaw is determined by the soil microbial sink journal August 2018
The thermodynamic ladder in geomicrobiology journal March 2011
Stimulation of Methanogenesis by Slurries of Saltmarsh Sediment after the Addition of Molybdate to Inhibit Sulphate-reducing Bacteria journal January 1983
Humics as an electron donor for anaerobic respiration journal February 1999
Geochemical drivers of organic matter decomposition in arctic tundra soils journal December 2015
Arctic Soil Governs Whether Climate Change Drives Global Losses or Gains in Soil Carbon journal December 2019
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation journal January 2012
Solid-phase organic matter reduction regulates anaerobic decomposition in bog soil journal May 2013
The contribution of Fe(III) and humic acid reduction to ecosystem respiration in drained thaw lake basins of the Arctic Coastal Plain: Fe(III) AND HA REDUCTION IN THE ARCTIC journal May 2013
Barriers to predicting changes in global terrestrial methane fluxes: analyses using CLM4Me, a methane biogeochemistry model integrated in CESM journal January 2011
Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska journal August 2014
QIIME allows analysis of high-throughput community sequencing data journal April 2010
A Membrane-Bound Cytochrome Enables Methanosarcina acetivorans To Conserve Energy from Extracellular Electron Transfer journal August 2019
Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales journal February 2013
Humic acids as electron acceptors in wetland decomposition journal July 2009
Effects of warming on the degradation and production of low-molecular-weight labile organic carbon in an Arctic tundra soil journal April 2016
Ancient low–molecular-weight organic acids in permafrost fuel rapid carbon dioxide production upon thaw journal October 2015
Different Temperature Optima for Methane Formation When Enrichments from Acid Peat Are Supplemented with Acetate or Hydrogen journal January 1984
Electron Donors Utilized by Sulfate-Reducing Bacteria in Eutrophic Lake Sediments † journal January 1981
Hydrogenation of organic matter as a terminal electron sink sustains high CO2:CH4 production ratios during anaerobic decomposition journal October 2017
Syntrophic Acetate-Oxidizing Microbes in Methanogenic Environments journal January 2008
Transport, anoxia and end-product accumulation control carbon dioxide and methane production and release in peat soils journal March 2017