Feature extraction via similarity search: application to atom finding and denoising in electron and scanning probe microscopy imaging

Somnath, Suhas; Smith, Christopher R.; Kalinin, Sergei V.; Chi, Miaofang; Borisevich, Albina; Cross, Nicholas; Duscher, Gerd; Jesse, Stephen

doi:10.1186/s40679-018-0052-y

Feature extraction via similarity search: application to atom finding and denoising in electron and scanning probe microscopy imaging

Journal Article · Thu Mar 01 00:00:00 EST 2018 · Advanced Structural and Chemical Imaging

DOI:https://doi.org/10.1186/s40679-018-0052-y· OSTI ID:1423378

; Smith, Christopher R.; Kalinin, Sergei V.; Chi, Miaofang; Borisevich, Albina; Cross, Nicholas; Duscher, Gerd; Jesse, Stephen

Not Available

View Journal Article

Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization:: USDOE Laboratory Directed Research and Development (LDRD) Program; USDOE Office of Science (SC), Basic Energy Sciences (BES). Materials Sciences & Engineering Division

Grant/Contract Number:: AC05-00OR22725

OSTI ID:: 1423378

Alternate ID(s):: OSTI ID: 1649654
OSTI ID: 22845916

Journal Information:: Advanced Structural and Chemical Imaging, Journal Name: Advanced Structural and Chemical Imaging Journal Issue: 1 Vol. 4; ISSN 2198-0926

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: Germany

Language:: English

References (28)

Interplay of Octahedral Tilts and Polar Order in BiFeO ₃ Films Kim, Young-Min; Kumar, Amit; Hatt, Alison Advanced Materials, Vol. 25, Issue 17 https://doi.org/10.1002/adma.201204584	journal	March 2013
Direct Observation of Atomic Dynamics and Silicon Doping at a Topological Defect in Graphene Yang, Zhiqing; Yin, Lichang; Lee, Jaekwang Angewandte Chemie International Edition, Vol. 53, Issue 34 https://doi.org/10.1002/anie.201403382	journal	June 2014
Controlled manipulation of single atoms and small molecules using the scanning tunnelling microscope: Controlled manipulation of single atoms and small molecules using STM Morgenstern, Karina; Lorente, Nicolas; Rieder, Karl-Heinz physica status solidi (b), Vol. 250, Issue 9 https://doi.org/10.1002/pssb.201248392	journal	July 2013
Informatics and data science in materials microscopy Voyles, Paul M. Current Opinion in Solid State and Materials Science, Vol. 21, Issue 3 https://doi.org/10.1016/j.cossms.2016.10.001	journal	June 2017
Manipulating low-dimensional materials down to the level of single atoms with electron irradiation Susi, Toma; Meyer, Jannik C.; Kotakoski, Jani Ultramicroscopy, Vol. 180 https://doi.org/10.1016/j.ultramic.2017.03.005	journal	September 2017
Phases and Interfaces from Real Space Atomically Resolved Data: Physics-Based Deep Data Image Analysis Vasudevan, Rama K.; Ziatdinov, Maxim; Jesse, Stephen Nano Letters, Vol. 16, Issue 9 https://doi.org/10.1021/acs.nanolett.6b02130	journal	August 2016
Better Catalysts through Microscopy: Mesoscale M1/M2 Intergrowth in Molybdenum–Vanadium Based Complex Oxide Catalysts for Propane Ammoxidation He, Qian; Woo, Jungwon; Belianinov, Alexei ACS Nano, Vol. 9, Issue 4 https://doi.org/10.1021/acsnano.5b00271	journal	February 2015
Towards 3D Mapping of BO ₆ Octahedron Rotations at Perovskite Heterointerfaces, Unit Cell by Unit Cell He, Qian; Ishikawa, Ryo; Lupini, Andrew R. ACS Nano, Vol. 9, Issue 8 https://doi.org/10.1021/acsnano.5b03232	journal	July 2015
Spontaneous Vortex Nanodomain Arrays at Ferroelectric Heterointerfaces Nelson, Christopher T.; Winchester, Benjamin; Zhang, Yi Nano Letters, Vol. 11, Issue 2 https://doi.org/10.1021/nl1041808	journal	February 2011
Mapping Octahedral Tilts and Polarization Across a Domain Wall in BiFeO ₃ from Z-Contrast Scanning Transmission Electron Microscopy Image Atomic Column Shape Analysis Borisevich, AlbinaY.; Ovchinnikov, Oleg S.; Chang, Hye Jung ACS Nano, Vol. 4, Issue 10 https://doi.org/10.1021/nn1011539	journal	October 2010
Spatially Resolved Mapping of Oxygen Reduction/Evolution Reaction on Solid-Oxide Fuel Cell Cathodes with Sub-10 nm Resolution Kumar, Amit; Leonard, Donovan; Jesse, Stephen ACS Nano, Vol. 7, Issue 5 https://doi.org/10.1021/nn303239e	journal	April 2013
Microscopy: Hasten high resolution Pennycook, Stephen J.; Kalinin, Sergei V. Nature, Vol. 515, Issue 7528 https://doi.org/10.1038/515487a	journal	November 2014
Chemically induced Jahn–Teller ordering on manganite surfaces Gai, Zheng; Lin, Wenzhi; Burton, J. D. Nature Communications, Vol. 5, Issue 1 https://doi.org/10.1038/ncomms5528	journal	July 2014
Unit-cell scale mapping of ferroelectricity and tetragonality in epitaxial ultrathin ferroelectric films Jia, Chun-Lin; Nagarajan, Valanoor; He, Jia-Qing Nature Materials, Vol. 6, Issue 1 https://doi.org/10.1038/nmat1808	journal	December 2006
Atomic-scale study of electric dipoles near charged and uncharged domain walls in ferroelectric films Jia, Chun-Lin; Mi, Shao-Bo; Urban, Knut Nature Materials, Vol. 7, Issue 1 https://doi.org/10.1038/nmat2080	journal	December 2007
How the doors to the nanoworld were opened Gerber, Christoph; Lang, Hans Peter Nature Nanotechnology, Vol. 1, Issue 1 https://doi.org/10.1038/nnano.2006.70	journal	October 2006
Differential phase-contrast microscopy at atomic resolution Shibata, Naoya; Findlay, Scott D.; Kohno, Yuji Nature Physics, Vol. 8, Issue 8 https://doi.org/10.1038/nphys2337	journal	June 2012
True molecular resolution in liquid by frequency-modulation atomic force microscopy Fukuma, Takeshi; Kobayashi, Kei; Matsushige, Kazumi Applied Physics Letters, Vol. 86, Issue 19 https://doi.org/10.1063/1.1925780	journal	May 2005
Atomic-resolution imaging in liquid by frequency modulation atomic force microscopy using small cantilevers with megahertz-order resonance frequencies Fukuma, T.; Onishi, K.; Kobayashi, N. Nanotechnology, Vol. 23, Issue 13 https://doi.org/10.1088/0957-4484/23/13/135706	journal	March 2012
Local crystallography analysis for atomically resolved scanning tunneling microscopy images Lin, Wenzhi; Li, Qing; Belianinov, Alexei Nanotechnology, Vol. 24, Issue 41 https://doi.org/10.1088/0957-4484/24/41/415707	journal	September 2013
Oxygen octahedron reconstruction in the SrTiO 3 / LaAlO 3 heterointerfaces investigated using aberration-corrected ultrahigh-resolution transmission electron microscopy Jia, C. L.; Mi, S. B.; Faley, M. Physical Review B, Vol. 79, Issue 8 https://doi.org/10.1103/PhysRevB.79.081405	journal	February 2009
Suppression of Octahedral Tilts and Associated Changes in Electronic Properties at Epitaxial Oxide Heterostructure Interfaces Borisevich, A. Y.; Chang, H. J.; Huijben, M. Physical Review Letters, Vol. 105, Issue 8 https://doi.org/10.1103/PhysRevLett.105.087204	journal	August 2010
Two-Dimensional Transition Metal Dichalcogenides under Electron Irradiation: Defect Production and Doping Komsa, Hannu-Pekka; Kotakoski, Jani; Kurasch, Simon Physical Review Letters, Vol. 109, Issue 3 https://doi.org/10.1103/PhysRevLett.109.035503	journal	July 2012
Direct Observation of Dopant Atom Diffusion in a Bulk Semiconductor Crystal Enhanced by a Large Size Mismatch Ishikawa, Ryo; Mishra, Rohan; Lupini, Andrew R. Physical Review Letters, Vol. 113, Issue 15 https://doi.org/10.1103/PhysRevLett.113.155501	journal	October 2014
7 × 7 Reconstruction on Si(111) Resolved in Real Space Binnig, G.; Rohrer, H.; Gerber, Ch. Physical Review Letters, Vol. 50, Issue 2 https://doi.org/10.1103/PhysRevLett.50.120	journal	January 1983
Atomic Force Microscope Binnig, G.; Quate, C. F.; Gerber, Ch. Physical Review Letters, Vol. 56, Issue 9 https://doi.org/10.1103/PhysRevLett.56.930	journal	March 1986
Observation of Transient Structural-Transformation Dynamics in a Cu2S Nanorod Zheng, H.; Rivest, J. B.; Miller, T. A. Science, Vol. 333, Issue 6039 https://doi.org/10.1126/science.1204713	journal	July 2011
Imaging Atomic Rearrangements in Two-Dimensional Silica Glass: Watching Silica's Dance Huang, P. Y.; Kurasch, S.; Alden, J. S. Science, Vol. 342, Issue 6155 https://doi.org/10.1126/science.1242248	journal	October 2013

Similar Records

Feature extraction via similarity search: application to atom finding and denoising in electron and scanning probe microscopy imaging

Dataset · Thu Aug 09 00:00:00 EDT 2018 · OSTI ID:1463696

Automated and Autonomous Experiments in Electron and Scanning Probe Microscopy

Journal Article · Thu Jul 15 20:00:00 EDT 2021 · ACS Nano · OSTI ID:1857888

Related Subjects

47 OTHER INSTRUMENTATION
atom finding
clustering
electron microscopy
image denoising
scanning transmission electron microscopy
scanning tunneling microscopy
singular value decomposition
statistics

Feature extraction via similarity search: application to atom finding and denoising in electron and scanning probe microscopy imaging

Citation Formats

References (28)

Similar Records

Related Subjects