Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

Journal Article · · Cell Reports Medicine
; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; more »; ; ; ; ; ; ; ; ; ; ; ; « less
Not Available
Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
National Cancer Institute (NCI); National Institutes of Health (NIH); USDOE
Contributing Organization:
Clinical Proteomic Tumor Analysis Consortium Investigators
Grant/Contract Number:
AC05-76RL01830
OSTI ID:
1829332
Alternate ID(s):
OSTI ID: 1642074
Report Number(s):
PNNL-SA--145681; S2666379120300045; 100004; PII: S2666379120300045
Journal Information:
Cell Reports Medicine, Journal Name: Cell Reports Medicine Journal Issue: 1 Vol. 1; ISSN 2666-3791
Publisher:
ElsevierCopyright Statement
Country of Publication:
United States
Language:
English

References (65)

Cell cycle regulation of CDK2 activity by phosphorylation of Thr160 and Tyr15. journal November 1992
Protein kinases that phosphorylate splicing factors: Roles in cancer development, progression and possible therapeutic options journal October 2017
On the Dependency of Cellular Protein Levels on mRNA Abundance journal April 2016
Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer journal July 2016
Pathogenic Germline Variants in 10,389 Adult Cancers journal April 2018
Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities journal May 2019
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma journal October 2019
Endocrine-Therapy-Resistant ESR1 Variants Revealed by Genomic Characterization of Breast-Cancer-Derived Xenografts journal September 2013
MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC–MS(/MS) features journal June 2008
The Tumor Suppressor DAP Kinase Is a Target of RSK-Mediated Survival Signaling journal October 2005
Cyclin E Deregulation Promotes Loss of Specific Genomic Regions journal May 2015
Activation of the FA pathway mediated by phosphorylation and ubiquitination journal October 2017
DNA replication stress: Causes, resolution and disease journal November 2014
Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts journal December 2015
Targeted Proteomic Analyses of Histone H4 Acetylation Changes Associated with Homologous-Recombination-Deficient High-Grade Serous Ovarian Carcinomas journal September 2017
Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases journal August 2008
Modulation of p53β and p53γ expression by regulating the alternative splicing of TP53 gene modifies cellular response journal June 2014
Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology journal March 2015
Integrated genomic analyses of ovarian carcinoma journal June 2011
Proteogenomic characterization of human colon and rectal cancer journal July 2014
Proteogenomics connects somatic mutations to signalling in breast cancer journal May 2016
Integrative genomics viewer journal January 2011
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples journal February 2013
A probability-based approach for high-throughput protein phosphorylation analysis and site localization journal September 2006
MS-GF+ makes progress towards a universal database search tool for proteomics journal October 2014
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm journal June 2009
Coordinated regulation of life and death by RB journal February 2003
High grade serous ovarian carcinomas originate in the fallopian tube journal October 2017
Molecular analysis of high-grade serous ovarian carcinoma with and without associated serous tubal intra-epithelial carcinoma journal October 2017
Death-associated protein kinase 1 mediates interleukin-1β production through regulating inlfammasome activation in Bv2 microglial cells and mice journal July 2018
The retinoblastoma tumor-suppressor gene, the exception that proves the rule journal August 2006
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles journal September 2005
Essential role for Cdk2 inhibitory phosphorylation during replication stress revealed by a human Cdk2 knockin mutation journal May 2013
Differential Phosphorylation of the Retinoblastoma Protein by G 1 /S Cyclin-dependent Kinases journal May 1997
Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels journal April 2014
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters journal May 2012
ProteoWizard: open source software for rapid proteomics tools development journal July 2008
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads journal June 2009
Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs journal May 2012
CrossMap: a versatile tool for coordinate conversion between genome assemblies journal December 2013
The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics journal June 2017
CharGer: clinical Characterization of Germline variants journal August 2018
dbSNP: the NCBI database of genetic variation journal January 2001
NetworKIN: a resource for exploring cellular phosphorylation networks journal December 2007
PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse journal December 2011
limma powers differential expression analyses for RNA-sequencing and microarray studies journal January 2015
ClinVar: public archive of interpretations of clinically relevant variants journal November 2015
COSMIC: somatic cancer genetics at high-resolution journal November 2016
The ExAC browser: displaying reference data information from over 60 000 exomes journal November 2016
Pathogenesis and heterogeneity of ovarian cancer journal January 2017
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data journal July 2010
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing journal February 2012
Kinase-Substrate Enrichment Analysis Provides Insights into the Heterogeneity of Signaling Pathway Activation in Leukemia Cells journal March 2013
Multi-Omics Profiling Reveals Distinct Microenvironment Characterization and Suggests Immune Escape Mechanisms of Triple-Negative Breast Cancer journal March 2019
Synthetic Lethal Strategy Identifies a Potent and Selective TTK and CLK1/2 Inhibitor for Treatment of Triple-Negative Breast Cancer with a Compromised G 1 –S Checkpoint journal June 2018
GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers journal April 2011
FLAGS, frequently mutated genes in public exomes journal December 2014
DNA damage response and cancer therapeutics through the lens of the Fanconi Anemia DNA repair pathway journal October 2017
The Ensembl Variant Effect Predictor journal June 2016
Translating the role of PARP inhibitors in triple-negative breast cancer journal August 2018
RB1 dual role in proliferation and apoptosis: Cell fate control and implications for cancer therapy journal June 2015
DNA replication stress and cancer: cause or cure? journal January 2016
Cancer statistics, 2018: Cancer Statistics, 2018 journal January 2018
Cell Origins of High-Grade Serous Ovarian Cancer journal November 2018
CD8+ and Regulatory T cells Differentiate Tumor Immune Phenotypes and Predict Survival in Locally Advanced Head and Neck Cancer journal September 2019