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Mechanistic insight into biopolymer induced iron oxide mineralization through quantification of molecular bonding

Journal Article · · Nanoscale Advances
DOI:https://doi.org/10.1039/D0NA00138D· OSTI ID:1634170
 [1];  [2];  [2];  [3];  [4];  [2];  [2];  [5];  [6];  [7]
  1. Physical Sciences Division, Pacific Northwest National Laboratory, Richland, USA, Molecular Foundry
  2. Nano-Science Center, Department of Chemistry, University of Copenhagen, Denmark
  3. Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, USA
  4. Biologic Sciences Division, Pacific Northwest National Laboratory, Richland, USA
  5. Physical Sciences Division, Pacific Northwest National Laboratory, Richland, USA
  6. Sandia National Laboratories, Livermore, USA
  7. Physical Sciences Division, Pacific Northwest National Laboratory, Richland, USA, Department of Material Science and Engineering

Microbial production of iron (oxyhydr)oxides biopolymers impact the global iron cycle and has been responsible for major biogeochemical events. Here we quantify the molecular bonding and its role for mineralization.

Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC05-76RL01830; NA0003525; AC02-06CH11357; AC02-05CH11231
OSTI ID:
1634170
Alternate ID(s):
OSTI ID: 1737808
OSTI ID: 1761472
OSTI ID: 1766185
OSTI ID: 1772940
Journal Information:
Nanoscale Advances, Journal Name: Nanoscale Advances Journal Issue: 8 Vol. 2; ISSN 2516-0230; ISSN NAADAI
Publisher:
Royal Society of ChemistryCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (71)

Iron Oxides in the Laboratary book April 2000
Cryo-XPS: probing intact interfaces in nature and life: Cryo-XPS allows studies of intact solid-aqueous solution interfaces journal April 2016
Microbial Extracellular Polymeric Substances book January 1999
Surface complexation studied via combined grazing-incidence EXAFS and surface diffraction: arsenate on hematite (0001) and (10–12) journal November 2006
Estimation of electrolyte-crystal-aqueous-solution interfacial tension journal September 1983
Electrolyte crystal growth mechanisms journal July 1984
Calibration and correction of spatial distortions in 2D detector systems
  • Hammersley, A. P.; Svensson, S. O.; Thompson, A.
  • Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 346, Issue 1-2 https://doi.org/10.1016/0168-9002(94)90720-X
journal July 1994
Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set journal July 1996
Ultrastructure and development of iron mineralization in the radular teeth of Cryptochiton stelleri (mollusca) journal January 1967
Hydrothermal phase stabilization of 2-line ferrihydrite by bacteria journal December 2004
XPS at solid–aqueous solution interface journal September 2006
Stretching single polysaccharide molecules using AFM: A potential method for the investigation of the intermolecular uronate distribution of alginate? journal January 2008
Synthetic coprecipitates of exopolysaccharides and ferrihydrite. Part I: Characterization journal February 2008
Iron biomineralization by anaerobic neutrophilic iron-oxidizing bacteria journal February 2009
Iron oxyhydroxide mineralization on microbial extracellular polysaccharides journal July 2009
A surface structural model for ferrihydrite I: Sites related to primary charge, molar mass, and mass density journal August 2009
Effects of temperature on rates and mineral products of microbial Fe(II) oxidation by Leptothrix cholodnii at microaerobic conditions journal May 2013
Formation, stability, and solubility of metal oxide nanoparticles: Surface entropy, enthalpy, and free energy of ferrihydrite journal June 2015
Precipitation pathways for ferrihydrite formation in acidic solutions journal January 2016
The transformation of ferrihydrite into goethite or hematite, revisited journal March 2006
Exopolysaccharides produced by bacteria isolated from the pelagic Southern Ocean — Role in Fe binding, chemical reactivity, and bioavailability journal January 2011
XPS with fast-frozen samples: A renewed approach to study the real mineral/solution interface journal June 2005
Practical single molecule force spectroscopy: How to determine fundamental thermodynamic parameters of intermolecular bonds with an atomic force microscope journal April 2013
Surface-Specific DFT + U Approach Applied to α-Fe 2 O 3 (0001) journal February 2016
The Molecular Mechanism of Iron(III) Oxide Nucleation journal August 2016
Composition in the Interface between Clay Mineral Surfaces and Divalent Cation Electrolytes journal May 2018
Single-molecular Pair Unbinding Studies of Mannuronan C-5 Epimerase AlgE4 and Its Polymer Substrate. journal July 2004
Hydrolysis of inorganic iron(III) salts journal February 1984
In Situ Observations of Nanoparticle Early Development Kinetics at Mineral−Water Interfaces journal November 2010
Size-Dependent Pb Sorption to Nanohematite in the Presence and Absence of a Microbial Siderophore journal April 2011
Contribution of Extracellular Polymeric Substances from Shewanella sp. HRCR-1 Biofilms to U(VI) Immobilization journal July 2011
Origin of the Differential Nanoscale Reactivity of Biologically and Chemically Formed Green Rust Crystals Investigated by Chemical Force Spectroscopy journal March 2014
Near-Equilibrium Chemical Force Microscopy journal March 2008
X-ray Photoelectron Spectroscopy of Fast-Frozen Hematite Colloids in Aqueous Solutions. 5. Halide Ion (F , Cl , Br , I ) Adsorption journal February 2013
Peeling Single-Stranded DNA from Graphite Surface to Determine Oligonucleotide Binding Energy by Force Spectroscopy journal December 2008
Mechanisms for Iron Oxide Formation under Hydrothermal Conditions: An in Situ Total Scattering Study journal October 2014
A new model for Proterozoic ocean chemistry journal December 1998
Nucleation and growth of magnetite from solution journal February 2013
Calcium carbonate nucleation driven by ion binding in a biomimetic matrix revealed by in situ electron microscopy journal January 2015
Quantifying the free energy landscape between polymers and minerals journal August 2017
Prebiotic RNA polymerisation: energetics of nucleotide adsorption and polymerisation on clay mineral surfaces journal January 2017
The thermodynamics of calcite nucleation at organic interfaces: Classical vs. non-classical pathways journal January 2012
Ordered ferrimagnetic form of ferrihydrite reveals links among structure, composition, and magnetism journal February 2010
Saccharides enhance iron bioavailability to Southern Ocean phytoplankton journal December 2010
Interpreting the widespread nonlinear force spectra of intermolecular bonds journal August 2012
Polysaccharide chemistry regulates kinetics of calcite nucleation through competition of interfacial energies journal May 2013
Reconciling disparate views of template-directed nucleation through measurement of calcite nucleation kinetics and binding energies journal January 2014
Oxygen Dependency of Neutrophilic Fe(II) Oxidation by Leptothrix Differs from Abiotic Reaction journal August 2012
Comparison of calibration methods for atomic-force microscopy cantilevers journal December 2002
Ab initiomolecular dynamics for liquid metals journal January 1993
Projector augmented-wave method journal December 1994
Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set journal October 1996
Electron-energy-loss spectra and the structural stability of nickel oxide: An LSDA+U study journal January 1998
From ultrasoft pseudopotentials to the projector augmented-wave method journal January 1999
Sequence-dependent force response during peeling of single-stranded DNA from graphite journal February 2010
Generalized Gradient Approximation Made Simple journal October 1996
Generalized Gradient Approximation Made Simple [Phys. Rev. Lett. 77, 3865 (1996)] journal February 1997
Rapid-acquisition pair distribution function (RA-PDF) analysis journal November 2003
PDFgetX2: a GUI-driven program to obtain the pair distribution function from X-ray powder diffraction data journal July 2004
Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics: Extracellular polymeric substances of Shewanella biofilms journal January 2011
Bacterial iron biomineralisation in nature journal July 1997
Microbial Polysaccharides Template Assembly of Nanocrystal Fibers journal March 2004
The Structure of Ferrihydrite, a Nanocrystalline Material journal June 2007
Size-Driven Structural and Thermodynamic Complexity in Iron Oxides journal March 2008
Direction-Specific Interactions Control Crystal Growth by Oriented Attachment journal May 2012
How Strong Is a Covalent Bond? journal March 1999
Aggregation-Based Crystal Growth and Microstructure Development in Natural Iron Oxyhydroxide Biomineralization Products journal August 2000
Effect of pH on the Formation of Goethite and Hematite from Ferrihydrite journal January 1983
Principles of Crystal Nucleation and Growth journal January 2003
Reduction of ferrihydrite with adsorbed and coprecipitated organic matter: microbial reduction by Geobacter bremensis vs. abiotic reduction by Na-dithionite journal January 2014
Ferrihydrite-associated organic matter (OM) stimulates reduction by Shewanella oneidensis MR-1 and a complex microbial consortia journal January 2017

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