Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Recent Developments in the General Atomic and Molecular Electronic Structure System

Journal Article · · Journal of Chemical Physics
DOI:https://doi.org/10.1063/5.0005188· OSTI ID:1633616
 [1];  [2];  [3];  [4];  [5];  [6];  [7];  [8];  [4];  [9];  [10];  [11];  [12];  [13];  [3];  [14];  [15];  [16];  [6];  [10] more »;  [17];  [18];  [10];  [6];  [10];  [10];  [1];  [19];  [10];  [10];  [4];  [6];  [20];  [21];  [21];  [3];  [10];  [10];  [6];  [22];  [10];  [23] « less
  1. Australian National University
  2. Argonne National Laboratory
  3. EP Analytics
  4. Ames Laboratory
  5. University of New England
  6. Michigan State University
  7. Nanosystem Research Institute, National Institute of Advanced Industrial Science and Technology
  8. Microsoft
  9. University of Colorado at Denver
  10. Iowa State University
  11. Oak Ridge National Laboratory
  12. Frederick National Laboratory for Cancer Research
  13. BATTELLE (PACIFIC NW LAB)
  14. University of Nebraska - Lincoln
  15. Nanjing University
  16. Sandia National Laboratory
  17. Lomonosov Moscow State University
  18. Kyocera Corporation
  19. Cray Inc. a Hewlett Packard Enterprise Company
  20. Purdue University
  21. Old Dominion University
  22. Western Michigan University
  23. IOWA STATE UNIVERSITY

A discussion of many of the recently implemented features of GAMESS (General Atomic and Molecular Electronic Structure System) and LibCChem (the C++ CPU/GPU library associated with GAMESS) is presented. These features include fragmentation methods like the fragment molecular orbital, effective fragment potential and effective fragment molecular orbital methods, hybrid MPI/OpenMP approaches to Hartree-Fock and resolution of the identity second order perturbation theory. Many new coupled cluster theory methods have been implemented in GAMESS, as have multiple levels of density functional/tight binding theory. The role of accelerators, especially graphical processing units, is discussed in the context of the new features of LibCChem, as is the associated problem of power consumption as the power of computers increases dramatically. The process by which a complex program suite like GAMESS is maintained and developed is considered. Future developments are briefly summarized.

Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division
DOE Contract Number:
AC05-76RL01830
OSTI ID:
1633616
Report Number(s):
PNNL-SA--152270
Journal Information:
Journal of Chemical Physics, Journal Name: Journal of Chemical Physics Journal Issue: 15 Vol. 152
Country of Publication:
United States
Language:
English

References (296)

Energy saving strategies for parallel applications with point-to-point communication phases journal August 2013
Use of an auxiliary basis set to describe the polarization in the fragment molecular orbital method journal March 2014
A Critical Assessment of Coupled Cluster Method in Quantum Chemistry book January 1999
Recent advances in electronic structure theory: Method of moments of coupled-cluster equations and renormalized coupled-cluster approaches journal October 2002
Psi4: an open-source ab initio electronic structure program : Psi4: an electronic structure program
  • Turney, Justin M.; Simmonett, Andrew C.; Parrish, Robert M.
  • Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 2, Issue 4 https://doi.org/10.1002/wcms.93
journal October 2011
Evaluation of B3LYP, X3LYP, and M06-Class Density Functionals for Predicting the Binding Energies of Neutral, Protonated, and Deprotonated Water Clusters journal March 2009
Linear scaling local correlation approach for solving the coupled cluster equations of large systems journal December 2001
Perturbation theory of large quantum systems journal January 1957
Iterative and non-iterative triple excitation corrections in coupled-cluster methods for excited electronic states: the EOM-CCSDT-3 and EOM-CCSD(T̃) methods journal August 1996
The dispersion interaction between quantum mechanics and effective fragment potential molecules journal June 2012
An improved and broadly accurate local approximation to the exchange–correlation density functional: The MN12-L functional for electronic structure calculations in chemistry and physics journal January 2012
Application of a semi‐empirical dispersion correction for modeling water clusters journal October 2018
Renormalized CCSD(T) and CCSD(TQ) approaches: Dissociation of the N2 triple bond journal October 2000
Breaking Bonds of Open-Shell Species with the Restricted Open-Shell Size Extensive Left Eigenstate Completely Renormalized Coupled-Cluster Method journal November 2008
Accurate ab initio potential energy curve of F2. I. Nonrelativistic full valence configuration interaction energies using the correlation energy extrapolation by intrinsic scaling method journal October 2007
Dispersion Interactions in Water Clusters journal May 2017
Geometry Optimizations of Open-Shell Systems with the Fragment Molecular Orbital Method journal May 2012
Direct configuration interaction and multiconfigurational self-consistent-field method for multiple active spaces with variable occupations. II. Application to oxoMn(salen) and N2O4 journal November 2003
Coupled-cluster methods with internal and semi-internal triply and quadruply excited clusters: CCSDt and CCSDtq approaches journal April 1999
Coupled‐cluster theory employing approximate integrals: An approach to avoid the input/output and storage bottlenecks journal July 1994
The equation of motion coupled‐cluster method. A systematic biorthogonal approach to molecular excitation energies, transition probabilities, and excited state properties journal May 1993
Improved Design of Orbital Domains within the Cluster-in-Molecule Local Correlation Framework: Single-Environment Cluster-in-Molecule Ansatz and Its Application to Local Coupled-Cluster Approach with Singles and Doubles journal August 2010
Implementation of the analytic energy gradient for the combined time-dependent density functional theory/effective fragment potential method: Application to excited-state molecular dynamics simulations journal February 2011
Accurate First Principles Model Potentials for Intermolecular Interactions journal April 2013
One- and two-electron integrals over cartesian gaussian functions journal February 1978
Solvent Screening in Zwitterions Analyzed with the Fragment Molecular Orbital Method journal August 2019
Response functions in the CC3 iterative triple excitation model journal November 1995
A derivation of the frozen-orbital unrestricted open-shell and restricted closed-shell second-order perturbation theory analytic gradient expressions
  • Aikens, Christine M.; Webb, Simon P.; Bell, Rob L.
  • Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta), Vol. 110, Issue 4 https://doi.org/10.1007/s00214-003-0453-3
journal November 2003
A full coupled‐cluster singles and doubles model: The inclusion of disconnected triples journal February 1982
Ab initio calculation of force constants and equilibrium geometries in polyatomic molecules : I. Theory journal January 1969
Optimizing conical intersections of solvated molecules: The combined spin-flip density functional theory/effective fragment potential method journal July 2012
Correlation energy extrapolation by intrinsic scaling. IV. Accurate binding energies of the homonuclear diatomic molecules carbon, nitrogen, oxygen, and fluorine journal April 2005
Biorthogonal method of moments of coupled-cluster equations: Alternative derivation, further considerations, and application to a model magnetic system journal January 2008
Extension of the active-space equation-of-motion coupled-cluster methods to radical systems: The EA-EOMCCSDt and IP-EOMCCSDt approaches journal January 2006
Revised M06 density functional for main-group and transition-metal chemistry journal September 2018
New coupled-cluster methods with singles, doubles, and noniterative triples for high accuracy calculations of excited electronic states journal January 2004
Extension of renormalized coupled-cluster methods including triple excitations to excited electronic states of open-shell molecules journal June 2005
Method of moments of coupled-cluster equations: a new formalism for designing accurate electronic structure methods for ground and excited states journal July 2004
Economical triple excitation equation-of-motion coupled-cluster methods for excitation energies journal February 1995
Improving the efficiency and convergence of geometry optimization with the polarizable continuum model: New energy gradients and molecular surface tessellation journal January 2004
Efficient computer implementation of the renormalized coupled-cluster methods: The R-CCSD[T], R-CCSD(T), CR-CCSD[T], and CR-CCSD(T) approaches journal December 2002
Advances, Applications and Performance of the Global Arrays Shared Memory Programming Toolkit journal May 2006
Fragment molecular orbital method: use of approximate electrostatic potential journal January 2002
Active-space equation-of-motion coupled-cluster methods for excited states of radicals and other open-shell systems: EA-EOMCCSDt and IP-EOMCCSDt journal October 2005
Implementation and benchmark of a long-range corrected functional in the density functional based tight-binding method journal November 2015
Active-space coupled-cluster study of electronic states of Be3 journal August 2005
The Distributed Data Interface in GAMESS journal June 2000
Exploring chemistry with the fragment molecular orbital method journal January 2012
Implementation of replica-exchange umbrella sampling in GAMESS journal July 2018
Horizontal vectorization of electron repulsion integrals journal September 2016
Approximate density-functional calculations of spin densities in large molecular systems and complex solids journal September 2001
Molecular Electronic-Structure Theory book August 2000
Core and Uncore Joint Frequency Scaling Strategy journal January 2018
Computation of electron repulsion integrals using the rys quadrature method journal July 1983
Fully analytic energy gradient in the fragment molecular orbital method journal March 2011
Massive-Parallel Implementation of the Resolution-of-Identity Coupled-Cluster Approaches in the Numeric Atom-Centered Orbital Framework for Molecular Systems journal July 2019
The importance of three-body terms in the fragment molecular orbital method journal April 2004
Analytic evaluation of energy gradients for the single and double excitation coupled cluster (CCSD) wave function: Theory and application journal November 1987
Quantum Machine Learning in Chemical Compound Space journal March 2018
Third-order density-functional tight-binding combined with the fragment molecular orbital method journal September 2015
The distributed data SCF journal February 2002
Doubly electron-attached and doubly ionized equation-of-motion coupled-cluster methods with 4-particle–2-hole and 4-hole–2-particle excitations and their active-space extensions journal May 2013
A comprehensive analysis of molecule-intrinsic quasi-atomic, bonding, and correlating orbitals. I. Hartree-Fock wave functions journal December 2013
Correlation energy extrapolation by intrinsic scaling. V. Electronic energy, atomization energy, and enthalpy of formation of water journal May 2006
Exploiting non-abelian point group symmetry in direct two-electron integral transformations journal January 1991
Molecule intrinsic minimal basis sets. II. Bonding analyses for Si4H6 and Si2 to Si10 journal February 2004
Analytic second derivative of the energy for density-functional tight-binding combined with the fragment molecular orbital method journal July 2016
New variations in two-electron integral evaluation in the context of direct SCF procedures journal February 1991
The active-space equation-of-motion coupled-cluster methods for excited electronic states: Full EOMCCSDt journal July 2001
Correlation Problems in Atomic and Molecular Systems. IV. Extended Coupled-Pair Many-Electron Theory and Its Application to the B H 3 Molecule journal January 1972
Biorthogonal moment expansions in coupled-cluster theory: Review of key concepts and merging the renormalized and active-space coupled-cluster methods journal June 2012
Importance of Three-Body Interactions in Molecular Dynamics Simulations of Water Demonstrated with the Fragment Molecular Orbital Method journal March 2016
RI-MP2: optimized auxiliary basis sets and demonstration of efficiency journal September 1998
Valence Virtual Orbitals: An Unambiguous ab Initio Quantification of the LUMO Concept journal October 2015
Excited-state potential energy curves of CH+: a comparison of the EOMCCSDt and full EOMCCSDT results journal October 2001
NWChem: A comprehensive and scalable open-source solution for large scale molecular simulations journal September 2010
Intrinsic local constituents of molecular electronic wave functions. I. Exact representation of the density matrix in terms of chemically deformed and oriented atomic minimal basis set orbitals journal May 2007
Integral approximations for LCAO-SCF calculations journal October 1993
In Search of the Relationship between Multiple Solutions Characterizing Coupled-Cluster Theories book October 2000
The full CCSDT model for molecular electronic structure journal June 1987
Construction of tight-binding-like potentials on the basis of density-functional theory: Application to carbon journal May 1995
Implementation and refinement of the modified-conductorlike screening quantum mechanical solvation model at the MP2 level journal November 2000
Many-body expansion of the Fock matrix in the fragment molecular orbital method journal September 2017
On the Correlation Problem in Atomic and Molecular Systems. Calculation of Wavefunction Components in Ursell‐Type Expansion Using Quantum‐Field Theoretical Methods journal December 1966
DFTB/PCM Applied to Ground and Excited State Potential Energy Surfaces journal December 2015
Quasi-degenerate second-order perturbation theory for occupation restricted multiple active space self-consistent field reference functions journal July 2011
Double spin-flip approach within equation-of-motion coupled cluster and configuration interaction formalisms: Theory, implementation, and examples journal January 2009
The fragment molecular orbital method: theoretical development, implementation in GAMESS, and applications: Fragment molecular orbital method in GAMESS journal June 2017
Revised M06-L functional for improved accuracy on chemical reaction barrier heights, noncovalent interactions, and solid-state physics journal July 2017
Multilevel Extension of the Cluster-in-Molecule Local Correlation Methodology: Merging Coupled-Cluster and Møller−Plesset Perturbation Theories journal June 2010
Self-consistent-charge density-functional tight-binding method for simulations of complex materials properties journal September 1998
A Comprehensive Analysis in Terms of Molecule-Intrinsic, Quasi-Atomic Orbitals. II. Strongly Correlated MCSCF Wave Functions journal October 2015
Modeling Solvent Effects on Electronic Excited States journal August 2011
Benchmarking the performance of time-dependent density functional methods journal March 2012
Unrestricted density functional theory based on the fragment molecular orbital method for the ground and excited state calculations of large systems journal April 2014
Multideterminant Wave Functions in Quantum Monte Carlo journal June 2012
Merging Active-Space and Renormalized Coupled-Cluster Methods via the CC( P ; Q ) Formalism, with Benchmark Calculations for Singlet–Triplet Gaps in Biradical Systems journal September 2012
A new approach for second-order perturbation theory journal March 2016
Embedding vs Supermolecular Strategies in Evaluating the Hydrogen-Bonding-Induced Shifts of Excitation Energies journal May 2011
Coupled-cluster theory based upon the fragment molecular-orbital method journal October 2005
Application of renormalized coupled-cluster methods to potential function of water journal May 2007
Coupled‐cluster singles, doubles and perturbative triples with density fitting approximation for massively parallel heterogeneous platforms journal January 2019
On the Use of the Cluster Expansion and the Technique of Diagrams in Calculations of Correlation Effects in Atoms and Molecules book January 2007
Solvent-Induced Shifts in Electronic Spectra of Uracil journal May 2011
Relativistic ab Initio Accurate Atomic Minimal Basis Sets: Quantitative LUMOs and Oriented Quasi-Atomic Orbitals for the Elements Li–Xe journal April 2017
Quasi-Atomic Bonding Analysis of Xe-Containing Compounds journal March 2018
Minimizing development and maintenance costs in supporting persistently optimized BLAS journal January 2005
Open MPI: Goals, Concept, and Design of a Next Generation MPI Implementation book January 2004
The Construction and Interpretation of Mcscf Wavefunctions journal October 1998
Intrinsic Resolution of Molecular Electronic Wave Functions and Energies in Terms of Quasi-atoms and Their Interactions journal January 2017
A Comprehensive Analysis in Terms of Molecule-Intrinsic, Quasi-Atomic Orbitals. III. The Covalent Bonding Structure of Urea journal October 2015
Efficient recursive computation of molecular integrals over Cartesian Gaussian functions journal April 1986
Active-space coupled-cluster methods journal November 2010
The Cobalt–Methyl Bond Dissociation in Methylcobalamin: New Benchmark Analysis Based on Density Functional Theory and Completely Renormalized Coupled-Cluster Calculations journal May 2012
Use of approximate integrals in ab initio theory. An application in MP2 energy calculations journal June 1993
An efficient MPI/OpenMP parallelization of the Hartree–Fock–Roothaan method for the first generation of Intel® Xeon Phi™ processor architecture journal February 2017
The method of moments of coupled-cluster equations and the renormalized CCSD[T], CCSD(T), CCSD(TQ), and CCSDT(Q) approaches journal July 2000
Two new classes of non-iterative coupled-cluster methods derived from the method of moments of coupled-cluster equations journal July 2006
Left-eigenstate completely renormalized equation-of-motion coupled-cluster methods: Review of key concepts, extension to excited states of open-shell systems, and comparison with electron-attached and ionized approaches journal November 2009
Bound states of a many-particle system journal June 1958
Parametrization and Benchmark of Long-Range Corrected DFTB2 for Organic Molecules journal December 2017
Fragment Molecular Orbital Molecular Dynamics with the Fully Analytic Energy Gradient journal September 2012
Are atoms intrinsic to molecular electronic wavefunctions? III. Analysis of FORS configurations journal September 1982
Coulombic potential energy integrals and approximations journal May 1973
Photoisomerization of Stilbene: A Spin-Flip Density Functional Theory Approach journal July 2011
Accurate Methods for Large Molecular Systems journal July 2009
A general spin-complete spin-flip configuration interaction method journal January 2018
Intrinsic local constituents of molecular electronic wave functions. II. Electronic structure analyses in terms of intrinsic oriented quasi-atomic molecular orbitals for the molecules FOOH, H2BH2BH2, H2CO and the isomerization HNO → NOH journal May 2007
A Comprehensive Analysis in Terms of Molecule-Intrinsic Quasi-Atomic Orbitals. IV. Bond Breaking and Bond Forming along the Dissociative Reaction Path of Dioxetane journal October 2015
Maximizing Performance under a Power Constraint on Modern Multicore Systems journal January 2019
Solvent-Induced Frequency Shifts: Configuration Interaction Singles Combined with the Effective Fragment Potential Method journal July 2010
Short-range correlations in nuclear wave functions journal June 1960
Correlation problems in atomic and molecular systems III. Rederivation of the coupled-pair many-electron theory using the traditional quantum chemical methodst journal July 1971
Effective Fragment Molecular Orbital Method: A Merger of the Effective Fragment Potential and Fragment Molecular Orbital Methods journal August 2010
Adaptive frozen orbital treatment for the fragment molecular orbital method combined with density-functional tight-binding journal February 2018
FireWorks: a dynamic workflow system designed for high-throughput applications: FireWorks: A Dynamic Workflow System Designed for High-Throughput Applications journal May 2015
Quantum Mechanical Continuum Solvation Models journal August 2005
Efficient Parallel Implementations of QM/MM-REMD (Quantum Mechanical/Molecular Mechanics-Replica-Exchange MD) and Umbrella Sampling: Isomerization of H 2 O 2 in Aqueous Solution journal June 2013
Quantum Monte Carlo and Related Approaches journal December 2011
Spin-flip configuration interaction: an electronic structure model that is both variational and size-consistent journal December 2001
Acceleration of High Angular Momentum Electron Repulsion Integrals and Integral Derivatives on Graphics Processing Units journal March 2015
Damping functions in the effective fragment potential method journal April 2009
Efficient vibrational analysis for unrestricted Hartree–Fock based on the fragment molecular orbital method journal May 2014
Solvent effects on optical properties of molecules: A combined time-dependent density functional theory/effective fragment potential approach journal October 2008
Spin-Flip Equation-of-Motion Coupled-Cluster Electronic Structure Method for a Description of Excited States, Bond Breaking, Diradicals, and Triradicals journal February 2006
An efficient way to include connected quadruple contributions into the coupled cluster method journal June 1998
Multiconfiguration self-consistent-field theory based upon the fragment molecular orbital method journal February 2005
Exchange repulsion between effective fragment potentials and ab initio molecules journal November 2009
S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures journal July 2011
Simulations of infrared and Raman spectra in solution using the fragment molecular orbital method journal January 2019
Locating Minimum Energy Crossings of Different Spin States Using the Fragment Molecular Orbital Method journal September 2019
MN15-L: A New Local Exchange-Correlation Functional for Kohn–Sham Density Functional Theory with Broad Accuracy for Atoms, Molecules, and Solids journal February 2016
Multi-reference averaged quadratic coupled-cluster method: a size-extensive modification of multi-reference CI journal November 1993
The averaged coupled-pair functional (ACPF): A size-extensive modification of MR CI(SD) journal January 1988
The equation-of-motion coupled-cluster method: Excitation energies of Be and CO journal December 1989
Communication: Toward an improved control of the fixed-node error in quantum Monte Carlo: The case of the water molecule journal April 2016
Combined Fragment Molecular Orbital Cluster in Molecule Approach to Massively Parallel Electron Correlation Calculations for Large Systems. journal April 2015
Multilayer Formulation of the Fragment Molecular Orbital Method (FMO) journal March 2005
Solvent Effects on the S N 2 Reaction:  Application of the Density Functional Theory-Based Effective Fragment Potential Method journal March 2005
Pro Git book January 2014
Polarization energy gradients in combined quantum mechanics, effective fragment potential, and polarizable continuum model calculations journal March 2007
A fifth-order perturbation comparison of electron correlation theories journal May 1989
Pair interaction molecular orbital method: an approximate computational method for molecular interactions journal October 1999
Multireference Møller—Plesset method journal March 1992
Artificial neural network correction for density-functional tight-binding molecular dynamics simulations journal June 2019
Extension of the fragment molecular orbital method to treat large open-shell systems in solution journal August 2015
Efficient electronic integrals and their generalized derivatives for object oriented implementations of electronic structure calculations journal December 2008
Breaking bonds with the left eigenstate completely renormalized coupled-cluster method journal November 2007
Mixed-precision evaluation of two-electron integrals by Rys quadrature journal August 2012
Three-body expansion of the fragment molecular orbital method combined with density-functional tight-binding journal January 2017
Analytic second derivatives of the energy in the fragment molecular orbital method journal April 2013
Benchmarking of the R –7 Anisotropic Dispersion Energy Term on the S22 Dimer Test Set journal July 2018
DFTB3: Extension of the Self-Consistent-Charge Density-Functional Tight-Binding Method (SCC-DFTB) journal March 2011
Many-body perturbation theory, coupled-pair many-electron theory, and the importance of quadruple excitations for the correlation problem journal November 1978
A new hierarchical parallelization scheme: Generalized distributed data interface (GDDI), and an application to the fragment molecular orbital method (FMO) journal January 2004
Single-reference, size-extensive, non-iterative coupled-cluster approaches to bond breaking and biradicals journal February 2006
The BRUSH algorithm for two-electron integrals on GPU journal February 2015
Radical damage in lipids investigated with the fragment molecular orbital method journal May 2016
The reduced multiplication scheme of the Rys quadrature and new recurrence relations for auxiliary function based two‐electron integral evaluation journal October 1991
Quantum Mechanics/Molecular Mechanics Method Combined with Hybrid All-Atom and Coarse-Grained Model: Theory and Application on Redox Potential Calculations journal March 2016
Quasi-Atomic Bond Analyses in the Sixth Period: I. Relativistic Accurate Atomic Minimal Basis Sets for the Elements Cesium to Radon journal June 2019
Quantum Monte Carlo algorithms for electronic structure at the petascale; the Endstation project journal July 2008
Analytic non-adiabatic couplings for the spin-flip ORMAS method journal January 2020
Energy-consistent pseudopotentials for quantum Monte Carlo calculations journal June 2007
Extension of the Renormalized Coupled-Cluster Methods Exploiting Left Eigenstates of the Similarity-Transformed Hamiltonian to Open-Shell Systems:  A Benchmark Study journal November 2007
An Accurate Quantum-Based Approach to Explicit Solvent Effects: Interfacing the General Effective Fragment Potential Method with Ab Initio Electronic Structure Theory journal July 2019
The spin-flip extended single excitation configuration interaction method journal August 2008
Combining active-space coupled-cluster methods with moment energy corrections via the CC( P ; Q ) methodology, with benchmark calculations for biradical transition states journal April 2012
Improving the Accuracy of Hybrid Meta-GGA Density Functionals by Range Separation journal October 2011
Performance of the completely renormalized equation-of-motion coupled-cluster method in calculations of excited-state potential cuts of water journal July 2014
Large-Scale Quantum-Mechanical Molecular Dynamics Simulations Using Density-Functional Tight-Binding Combined with the Fragment Molecular Orbital Method journal December 2015
Excited state geometry optimizations by time-dependent density functional theory based on the fragment molecular orbital method journal May 2009
The transition from the open minimum to the ring minimum on the ground state and on the lowest excited state of like symmetry in ozone: A configuration interaction study journal March 2016
Fragment molecular orbital study of the electronic excitations in the photosynthetic reaction center of Blastochloris viridis journal January 2009
Extending the Power of Quantum Chemistry to Large Systems with the Fragment Molecular Orbital Method journal August 2007
New parallel algorithm for MP2 energy gradient calculations journal January 2007
Density functional tight binding: values of semi-empirical methods in an ab initio era journal January 2014
MN15: A Kohn–Sham global-hybrid exchange–correlation density functional with broad accuracy for multi-reference and single-reference systems and noncovalent interactions journal January 2016
Molecular Electrostatic Potential and Electron Density of Large Systems in Solution Computed with the Fragment Molecular Orbital Method journal June 2019
Can ordinary single-reference coupled-cluster methods describe the potential energy curve of N2? The renormalized CCSDT(Q) study journal August 2001
LAPACK Users' Guide software January 1999
Improvements on the direct SCF method: Improved Direct SCF Method journal January 1989
Two-Electron Integrals over Gaussian Geminals journal September 2016
Acceleration of Electron Repulsion Integral Evaluation on Graphics Processing Units via Use of Recurrence Relations journal December 2012
A spin-complete version of the spin-flip approach to bond breaking: What is the impact of obtaining spin eigenfunctions? journal May 2003
Analytic Gradients for the Effective Fragment Molecular Orbital Method journal September 2016
The reduced multiplication scheme of the Rys-Gauss quadrature for 1st order integral derivatives journal June 1993
Spin-flip, tensor equation-of-motion configuration interaction with a density-functional correction: A spin-complete method for exploring excited-state potential energy surfaces journal December 2015
A method for two‐electron Gaussian integral and integral derivative evaluation using recurrence relations journal November 1988
Computation of electron repulsion integrals involving contracted Gaussian basis functions journal May 1978
Fully Integrated Effective Fragment Molecular Orbital Method journal April 2013
Solvent-Induced Shift of the Lowest Singlet π → π* Charge-Transfer Excited State of p -Nitroaniline in Water: An Application of the TDDFT/EFP1 Method journal September 2011
Benchmarking the completely renormalised equation-of-motion coupled-cluster approaches for vertical excitation energies journal September 2015
The spin–flip approach within time-dependent density functional theory: Theory and applications to diradicals journal March 2003
Quantum Monte Carlo simulations of solids journal January 2001
The prism algorithm for two-electron integrals journal December 1991
Optimizing Conical Intersections by Spin−Flip Density Functional Theory: Application to Ethylene journal November 2009
New Multithreaded Hybrid CPU/GPU Approach to Hartree–Fock journal September 2012
New formulation and implementation for volume polarization in dielectric continuum theory journal June 2006
Derivation and Implementation of the Gradient of the R –7 Dispersion Interaction in the Effective Fragment Potential Method journal January 2016
Density functional theory based effective fragment potential method journal April 2003
libreta : Computerized Optimization and Code Synthesis for Electron Repulsion Integral Evaluation journal January 2018
Development of a combined quantum monte carlo-effective fragment molecular orbital method journal June 2018
An approximate formula for the intermolecular Pauli repulsion between closed shell molecules journal December 1996
Density-Functional Tight-Binding Combined with the Fragment Molecular Orbital Method journal October 2014
Analytic Gradients for the Spin-Flip ORMAS-CI Method: Optimizing Minima, Saddle Points, and Conical Intersections journal January 2019
Screened-exchange density functionals with broad accuracy for chemistry and solid-state physics journal January 2012
New algorithm for tensor contractions on multi-core CPUs, GPUs, and accelerators enables CCSD and EOM-CCSD calculations with over 1000 basis functions on a single compute node journal March 2017
Size-consistent wave functions for bond-breaking: the equation-of-motion spin-flip model journal April 2001
Coupled-cluster theory in quantum chemistry journal February 2007
The active-space equation-of-motion coupled-cluster methods for excited electronic states: The EOMCCSDt approach journal November 2000
SIMOMM:  An Integrated Molecular Orbital/Molecular Mechanics Optimization Scheme for Surfaces journal April 1999
A Quasi-Atomic Analysis of Three-Center Two-Electron Zr–H–Si Interactions journal November 2018
Multi-electron integrals: Multi-electron integrals
  • Reine, Simen; Helgaker, Trygve; Lindh, Roland
  • Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 2, Issue 2 https://doi.org/10.1002/wcms.78
journal July 2011
Accuracy and Efficiency of Coupled-Cluster Theory Using Density Fitting/Cholesky Decomposition, Frozen Natural Orbitals, and a t 1 -Transformed Hamiltonian journal May 2013
Identification and Characterization of Molecular Bonding Structures by ab initio Quasi-Atomic Orbital Analyses journal November 2017
Correlation energy extrapolation by intrinsic scaling. II. The water and the nitrogen molecule journal January 2004
Singularity: Scientific containers for mobility of compute journal May 2017
Optimization of the Coupled Cluster Implementation in NWChem on Petascale Parallel Architectures journal September 2014
Evaluation of molecular integrals over Gaussian basis functions journal July 1976
Fragmentation Methods: A Route to Accurate Calculations on Large Systems journal August 2011
Quantum chemical prediction of vibrational spectra of large molecular systems with radical or metallic electronic structure journal January 2017
Analytic gradients for coupled‐cluster energies that include noniterative connected triple excitations: Application to c i s ‐ and t r a n s ‐HONO journal May 1991
Uncontracted Rys Quadrature Implementation of up to G Functions on Graphical Processing Units journal February 2010
Evaluation of charge penetration between distributed multipolar expansions journal May 2000
Two-electron repulsion integrals over Gaussians functions journal December 1991
A direct coupled cluster algorithm for massively parallel computers journal January 1997
Hybrid Distributed/Shared Memory Model for the RI-MP2 Method in the Fragment Molecular Orbital Framework journal September 2019
Efficient formulation and computer implementation of the active-space electron-attached and ionized equation-of-motion coupled-cluster methods journal December 2006
A Novel Approach to Parallel Coupled Cluster Calculations:  Combining Distributed and Shared Memory Techniques for Modern Cluster Based Systems journal May 2007
Analytic energy gradient for second-order Møller-Plesset perturbation theory based on the fragment molecular orbital method journal July 2011
Correlation energy extrapolation by intrinsic scaling. I. Method and application to the neon atom journal January 2004
Exploring the effect of anharmonicity of molecular vibrations on thermodynamic properties journal December 2006
Efficient parallel algorithm of second-order Møller-Plesset perturbation theory with resolution-of-identity approximation (RI-MP2) journal January 2009
Localized Atomic and Molecular Orbitals journal July 1963
The Fragment Molecular Orbital Method Based on Long-Range Corrected Density-Functional Tight-Binding journal April 2019
A systematic multireference perturbation-theory study of the low-lying states of SiC3 journal January 2006
Three- and four-electron integrals involving Gaussian geminals: Fundamental integrals, upper bounds, and recurrence relations journal July 2017
Analysis of Solute–Solvent Interactions in the Fragment Molecular Orbital Method Interfaced with Effective Fragment Potentials: Theory and Application to a Solvated Griffithsin–Carbohydrate Complex journal August 2012
Equation-of-motion spin-flip coupled-cluster model with single and double substitutions: Theory and application to cyclobutadiene journal January 2004
Revised M11 Exchange-Correlation Functional for Electronic Excitation Energies and Ground-State Properties journal February 2019
Coupled-cluster interpretation of the photoelectron spectrum of Ag3− journal August 2016
OpenMP: an industry standard API for shared-memory programming journal January 1998
Solvation and the excited states of formamide journal October 1997
Solvation of the Excited States of Chromophores in Polarizable Environment: Orbital Relaxation versus Polarization journal August 2010
Hybrid Correlation Energy (HyCE): An Approach Based on Separate Evaluations of Internal and External Components journal May 2018
Quasi-Atomic Bond Analyses in the Sixth Period: II. Bond Analyses of Cerium Oxides journal June 2019
Cluster-in-molecule local correlation method for post-Hartree–Fock calculations of large systems journal February 2016
Direct configuration interaction and multiconfigurational self-consistent-field method for multiple active spaces with variable occupations. I. Method journal November 2003
Fragment molecular orbital method: an approximate computational method for large molecules journal November 1999
Charge transfer interaction in the effective fragment potential method journal June 2006
General atomic and molecular electronic structure system journal November 1993
Accurate Potential Energy Curve for B 2 . Ab Initio Elucidation of the Experimentally Elusive Ground State Rotation-Vibration Spectrum journal February 2012
Electron correlation theories and their application to the study of simple reaction potential surfaces journal November 1978
An efficient implementation of the “cluster-in-molecule” approach for local electron correlation calculations journal August 2006
The R –7 Dispersion Interaction in the General Effective Fragment Potential Method journal March 2014
Fast and Flexible Coupled Cluster Implementation journal July 2013
Are atoms intrinsic to molecular electronic wavefunctions? I. The FORS model journal September 1982
Are atoms sic to molecular electronic wavefunctions? II. Analysis of fors orbitals journal September 1982
Two-electron integral evaluation on the graphics processor unit journal January 2007
Covalent bonds are created by the drive of electron waves to lower their kinetic energy through expansion journal May 2014
Communication: Coupled-cluster interpretation of the photoelectron spectrum of Au 3− journal September 2014
Correlation energy extrapolation by intrinsic scaling. III. Compact wave functions journal January 2004
General implementation of the resolution-of-the-identity and Cholesky representations of electron repulsion integrals within coupled-cluster and equation-of-motion methods: Theory and benchmarks journal October 2013
Restricted active space spin-flip configuration interaction approach: theory, implementation and examples journal January 2009
Prescreening of two-electron integral derivatives in SCF gradient and Hessian calculations: PRESCREENING OF TWO-ELECTRON INTEGRAL DERIVATIVES journal November 1991
Quantum chemistry on parallel computer architectures: coupled-cluster theory applied to the bending potential of fulminic acid journal June 1992
Renormalized coupled-cluster methods exploiting left eigenstates of the similarity-transformed Hamiltonian journal December 2005
Local correlation calculations using standard and renormalized coupled-cluster approaches journal September 2009
Fragment molecular orbital method: application to polypeptides journal March 2000
The Fragment Molecular Orbital Method book January 2009
Analytic Gradient for Density Functional Theory Based on the Fragment Molecular Orbital Method journal November 2014
Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics journal February 2018
Development of the FMO/RI-MP2 Fully Analytic Gradient Using a Hybrid-Distributed/Shared Memory Programming Model journal January 2020
The Theory of Intermolecular Forces book January 2013
An effective fragment method for modeling solvent effects in quantum mechanical calculations journal August 1996

Cited By (2)

Fewest switches surface hopping with Baeck-An couplings journal January 2021
Fewest switches surface hopping with Baeck-An couplings journal March 2022

Similar Records

Recent developments in the general atomic and molecular electronic structure system
Journal Article · Thu Apr 16 00:00:00 EDT 2020 · Journal of Chemical Physics · OSTI ID:1616813

Porting Fragmentation Methods to Graphical Processing Units Using an OpenMP Application Programming Interface: Offloading the Fock Build for Low Angular Momentum Functions
Journal Article · Mon Apr 03 00:00:00 EDT 2023 · Journal of Chemical Theory and Computation · OSTI ID:1986182