skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: A genetic link between leaf carbon isotope composition and whole-plant water use efficiency in the C4 grass Setaria

Journal Article · · The Plant Journal
DOI:https://doi.org/10.1111/tpj.14696· OSTI ID:1633319

Genetic selection for whole-plant water use efficiency (yield per transpiration; WUEplant) in any crop-breeding programme requires high-throughput phenotyping of component traits of WUEplant such as intrinsic water use efficiency (WUEi; CO2 assimilation rate per stomatal conductance). Measuring WUEi by gas exchange measurements is laborious and time consuming and may not reflect an integrated WUEi over the life of the leaf. Alternatively, leaf carbon stable isotope composition (δ13Cleaf) has been suggested as a potential time-ntegrated proxy for WUEi that may provide a tool to screen for WUEplant. However, a genetic link between δ13Cleaf and WUEplant in a C4 species has not been well established. Thus, to confirm if there is a genetic relationship in a C4 plant between δ13Cleaf and WUEplant under well watered and water-limited growth conditions, a high-throughput phenotyping facility was used to measure WUEplant in a recombinant inbred line (RIL) population created between the C4 grasses Setaria viridis and S. italica . Three quantitative trait loci (QTL) for δ13Cleaf were found and co-localized with transpiration, biomass accumulation, and WUEplant. Additionally, WUEplant for each of the δ13Cleaf QTL allele classes was negatively correlated with δ13Cleaf, as would be predicted when WUEi influences WUEplant. These findings demonstrate that δ13Cleaf is genetically linked to WUEplant, likely to be through their relationship with WUEi, and can be used as a high-throughput proxy to screen for WUEplant in these C4 species.

Research Organization:
Donald Danforth Plant Science Center, St. Louis, MO (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); USDA
Grant/Contract Number:
SC0018277; SC0008769
OSTI ID:
1633319
Alternate ID(s):
OSTI ID: 1602562
Journal Information:
The Plant Journal, Vol. 102, Issue 6; ISSN 0960-7412
Publisher:
Society for Experimental BiologyCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 16 works
Citation information provided by
Web of Science

References (89)

Carbon isotope composition, water use efficiency, and drought sensitivity are controlled by a common genomic segment in maize journal September 2018
Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria journal June 2017
Root traits and δ13C and δ18O of durum wheat under different water regimes journal January 2012
The physiological basis for genetic variation in water use efficiency and carbon isotope composition in Arabidopsis thaliana journal July 2013
Improving water use efficiency of vineyards in semi-arid regions. A review journal December 2014
Comparative ecophysiology of leaf and canopy photosynthesis journal October 1995
Carbon isotope discrimination as a tool to explore C4 photosynthesis journal April 2014
Predicted versus measured photosynthetic water-use efficiency of crop stands under dynamically changing field environments journal September 2004
Shade compromises the photosynthetic efficiency of NADP-ME less than that of PEP-CK and NAD-ME C4 grasses journal April 2018
Breeding for high water-use efficiency journal September 2004
Net carbon exchange in grapevine canopies responds rapidly to timing and extent of regulated deficit irrigation journal January 2011
A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria journal October 2015
Stomatal Size, Speed, and Responsiveness Impact on Photosynthesis and Water Use Efficiency journal February 2014
Identification of causal relationships among traits related to drought resistance in Stylosanthes scabra using QTL analysis journal February 2001
Improving Intrinsic Water-Use Efficiency and Crop Yield journal January 2002
Foxtail Millet: A Sequence-Driven Grass Model System: Figure 1. journal January 2009
Improving water use in crop production journal July 2007
Yield improvement and adaptation of wheat to water-limited environments in Australia—a case study journal January 2014
Carbon Isotope Discrimination is Positively Correlated with Grain Yield and Dry Matter Production in Field-Grown Wheat1 journal January 1987
From leaf to whole-plant water use efficiency (WUE) in complex canopies: Limitations of leaf WUE as a selection target journal June 2015
Oxygen isotope enrichment (Δ 18 O) reflects yield potential and drought resistance in maize journal November 2009
Genome-wide association study (GWAS) of carbon isotope ratio (δ13C) in diverse soybean [Glycine max (L.) Merr.] genotypes journal November 2014
Increasing water use efficiency of irrigated sugarcane production in South Africa through better agronomic practices journal May 2015
Combined use of δ13C, δ18O and δ15N tracks nitrogen metabolism and genotypic adaptation of durum wheat to salinity and water deficit journal February 2012
Carbon isotopes and water use efficiency in C4 plants journal June 2016
Genetic Variation for Carbon Isotope Discrimination in Sunflower: Association with Transpiration Efficiency and Evidence for Cytoplasmic Inheritance journal September 2004
Acclimation of C4 metabolism to low light in mature maize leaves could limit energetic losses during progressive shading in a crop canopy journal March 2014
Photosynthetic flexibility in maize exposed to salinity and shade journal April 2014
Isotopic analyses based on the mass spectra of carbon dioxide journal June 1985
Rapid canopy closure for maize production in the northern US corn belt: Radiation-use efficiency and grain yield journal February 1997
Genetic Control of Water Use Efficiency and Leaf Carbon Isotope Discrimination in Sunflower (Helianthus annuus L.) Subjected to Two Drought Scenarios journal July 2014
Dual Δ13C/δ18O response to water and nitrogen availability and its relationship with yield in field-grown durum wheat: Δ13C, δ18O and yield responses to water and N availability journal December 2010
Construction of RFLP-based maps of foxtail millet, Setaria italica (L.) P. Beauv. journal January 1998
Quantitative trait loci associated with natural diversity in water-use efficiency and response to soil drying in Brachypodium distachyon journal October 2016
Detection of a quantitative trait locus controlling carbon isotope discrimination and its contribution to stomatal conductance in japonica rice journal February 2009
Correlation between carbon isotope discrimination and transpiration efficiency in lines of the C4 species Sorghum bicolor in the glasshouse and the field journal January 1998
Comparative performance of δ13C, δ18O and δ15N for phenotyping durum wheat adaptation to a dryland environment journal January 2013
Using carbon isotope discrimination to select maize (Zea mays L.) inbred lines and hybrids for drought tolerance journal October 2007
Physiological and agronomic approaches for improving water-use efficiency in crop plants journal June 2019
Components of Water Use Efficiency Have Unique Genetic Signatures in the Model C 4 Grass Setaria journal August 2018
Improving water use efficiency in grapevines: potential physiological targets for biotechnological improvement journal January 2010
On the Nature of Carbon Isotope Discrimination in C4 Species journal January 1983
Mapping Quantitative Trait Loci Underlying Function-Valued Traits Using Functional Principal Component Analysis and Multi-Trait Mapping journal November 2015
Acclimation to low light by C4 maize: implications for bundle sheath leakiness: Maize acclimation to low light journal October 2013
Carbon and nitrogen winter storage and remobilisation during seasonal flush growth in two-year-old cork oak ( Quercus suber L.) saplings journal October 2004
Improving agricultural water use efficiency in arid and semiarid areas of China journal February 2006
The efficiency of C4 photosynthesis under low light conditions: assumptions and calculations with CO2 isotope discrimination journal April 2011
Variations in nitrogen use efficiency reflect the biochemical subtype while variations in water use efficiency reflect the evolutionary lineage of C 4 grasses at inter-glacial CO 2 : Photosynthetic NUE and WUE of C journal December 2015
Quantitative trait loci controlling water use efficiency and related traits in Quercus robur L. journal August 2007
Potential yield and water-use efficiency benefits in sorghum from limited maximum transpiration rate journal January 2005
Has photosynthetic capacity increased with 80 years of soybean breeding? An examination of historical soybean cultivars: Photosynthesis in historical soybean cultivars journal February 2016
Water-Use Efficiency in Crop Production journal January 1984
How can we breed for more water use-efficient sugarcane? journal February 2016
QTLs for grain carbon isotope discrimination in field-grown barley journal December 2002
Increasing agricultural water use efficiency to meet future food production journal December 2000
Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping journal February 2009
Reduced nighttime transpiration is a relevant breeding target for high water-use efficiency in grapevine journal July 2016
Enhancing Water Use Efficiency in Irrigated Agriculture journal January 2001
Water Use Efficiency as a Constraint and Target for Improving the Resilience and Productivity of C 3 and C 4 Crops journal April 2019
Water-use efficiency in grapevine cultivars grown under controlled conditions: effects of water stress at the leaf and whole-plant level: Genotypic variability of water-use efficiency journal May 2012
Deficit irrigation in grapevine improves water-use efficiency while controlling vigour and production quality journal April 2007
Isotopic Composition of Plant Carbon Correlates With Water-Use Efficiency of Wheat Genotypes journal January 1984
Leaf stable carbon isotope composition reflects transpiration efficiency in Zea mays journal December 2018
Identification and characterization of QTL underlying whole-plant physiology in Arabidopsis thaliana: delta13C, stomatal conductance and transpiration efficiency journal June 2005
Performance and water-use efficiency (single-leaf vs. whole-canopy) of well-watered and half-stressed split-root Lambrusco grapevines grown in Po Valley (Italy) journal January 2009
The Operation of Two Decarboxylases, Transamination, and Partitioning of C4 Metabolic Processes between Mesophyll and Bundle Sheath Cells Allows Light Capture To Be Balanced for the Maize C4 Pathway journal November 2013
Effect of atmospheric concentration of water vapour and CO2 in determining transpiration-photosynthesis relationships of cotton leaves journal August 1965
Variability of water use efficiency in grapevines journal July 2014
Comparative genetic maps of foxtail millet (Setaria italica) and rice (Oryza sativa) journal January 1998
Relationship of leaf oxygen and carbon isotopic composition with transpiration efficiency in the C4 grasses Setaria viridis and Setaria italica journal June 2017
Stopping the leaks: new insights into C 4 photosynthesis at low light: C 4 photosynthesis at low light journal February 2014
Fine mapping a QTL for carbon isotope composition in tomato journal April 2008
High-throughput Phenotyping and Genomic Selection: The Frontiers of Crop Breeding ConvergeF: High-throughput Phenotyping and Genomic Selection journal May 2012
Bundle-sheath leakiness in C4 photosynthesis: a careful balancing act between CO2 concentration and assimilation journal April 2014
The ERECTA gene regulates plant transpiration efficiency in Arabidopsis journal July 2005
The influence of light quality on C4 photosynthesis under steady-state conditions in Zea mays and Miscanthus × giganteus: changes in rates of photosynthesis but not the efficiency of the CO2 concentrating mechanism: Light quality affects C4 photosynthesis journal December 2011
Genetic dissection of cotton physiological responses to arid conditions and their inter-relationships with productivity journal February 2004
Water and nitrogen conditions affect the relationships of Δ13C and Δ18O to gas exchange and growth in durum wheat journal February 2009
How yield relates to ash content, Δ13C and Δ18O in maize grown under different water regimes journal September 2009
Two new organic reference materials for δ 13 C and δ 15 N measurements and a new value for the δ 13 C of NBS 22 oil : Organic reference materials for journal October 2003
Short-term thermal photosynthetic responses of C4 grasses are independent of the biochemical subtype journal September 2017
High-precision continuous-flow isotope ratio mass spectrometry journal January 1997
Transpiration efficiency and carbon-isotope discrimination of grapevines grown under well-watered conditions in either glasshouse or vineyard journal October 2001
Stable Carbon Isotope Discrimination Is under Genetic Control in the C4 Species Maize with Several Genomic Regions Influencing Trait Expression journal November 2013
Quantitative trait loci for carbon isotope discrimination are repeatable across environments and wheat mapping populations journal September 2008
Mapping of QTLs Controlling Carbon Isotope Discrimination in the Photosynthetic System using Recombinant Inbred Lines Derived from a Cross between Two Different Rice( Oryza sativa L.) Cultivars journal January 2006
Carbon Isotope Discrimination and Photosynthesis journal June 1989
GENETICS OF DROUGHT ADAPTATION IN ARABIDOPSIS THALIANA II. QTL ANALYSIS OF A NEW MAPPING POPULATION, KAS-1 × TSU-1 journal December 2008
Transpiration efficiency: new insights into an old story journal March 2014