Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria

Journal Article · · Microbiome
Background: In a warmer world, microbial decomposition of previously frozen organic carbon (C) is one of the most likely positive climate feedbacks of permafrost regions to the atmosphere. However, mechanistic understanding of microbial mediation on chemically recalcitrant C instability is limited; thus, it is crucial to identify and evaluate active decomposers of chemically recalcitrant C, which is essential for predicting C-cycle feedbacks and their relative strength of influence on climate change. Using stable isotope probing of the active layer of Arctic tundra soils after depleting soil labile C through a 975-day laboratory incubation, the identity of microbial decomposers of lignin and, their responses to warming were revealed. Results: The β-Proteobacteria genus Burkholderia accounted for 95.1% of total abundance of potential lignin decomposers. Consistently, Burkholderia isolated from our tundra soils could grow with lignin as the sole C source. A 2.2 °C increase of warming considerably increased total abundance and functional capacities of all potential lignin decomposers. In addition to Burkholderia, α-Proteobacteria capable of lignin decomposition (e.g. Bradyrhizobium and Methylobacterium genera) were stimulated by warming by 82-fold. Those community changes collectively doubled the priming effect, i.e., decomposition of existing C after fresh C input to soil. Consequently, warming aggravates soil C instability, as verified by microbially enabled climate-C modeling. Conclusions: Our findings are alarming, which demonstrate that accelerated C decomposition under warming conditions will make tundra soils a larger biospheric C source than anticipated.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
National Natural Science Foundation of China (NSFC); USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231; SC0004601; SC0010715
OSTI ID:
1632050
Alternate ID(s):
OSTI ID: 1695732
Journal Information:
Microbiome, Journal Name: Microbiome Journal Issue: 1 Vol. 8; ISSN 2049-2618
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (63)

Modeling Global Soil Carbon and Soil Microbial Carbon by Integrating Microbial Processes into the Ecosystem Process Model TRIPLEX-GHG: GLOBAL SOIL CARBON AND MICROBIAL CARBON journal October 2017
Bacterial degradation of lignin journal November 1988
Degradation of lignin by bacteria journal February 1990
Warming induced changes in soil carbon and nitrogen influence priming responses in four ecosystems journal March 2018
The emerging role for bacteria in lignin degradation and bio-product formation journal June 2011
Parameter estimation for models of ligninolytic and cellulolytic enzyme kinetics journal May 2012
Permafrost microbial community traits and functional diversity indicate low activity at in situ thaw temperatures journal August 2015
Temperature sensitivity of organic matter decomposition of permafrost-region soils during laboratory incubations journal June 2016
Investigating the controls on soil organic matter decomposition in tussock tundra soil and permafrost after fire journal August 2016
Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils journal February 2014
Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies journal August 2011
Discovery and Characterization of Heme Enzymes from Unsequenced Bacteria: Application to Microbial Lignin Degradation journal November 2011
Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments journal September 2011
Microbial dormancy improves development and experimental validation of ecosystem model journal July 2014
Temperature sensitivity of soil carbon decomposition and feedbacks to climate change journal March 2006
The effect of permafrost thaw on old carbon release and net carbon exchange from tundra journal May 2009
Activation of old carbon by erosion of coastal and subsea permafrost in Arctic Siberia journal August 2012
Long-term warming restructures Arctic tundra without changing net soil carbon storage journal May 2013
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes journal May 2013
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life journal August 2018
Old soil carbon losses increase with ecosystem respiration in experimentally thawed tundra journal October 2015
Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming journal February 2016
Temperature mediates continental-scale diversity of microbes in forest soils journal July 2016
UPARSE: highly accurate OTU sequences from microbial amplicon reads journal August 2013
Fast and sensitive protein alignment using DIAMOND journal November 2014
DNA stable-isotope probing journal April 2007
Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing journal September 2018
Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon journal August 2019
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries journal November 2018
UCHIME improves sensitivity and speed of chimera detection journal June 2011
FLASH: fast length adjustment of short reads to improve genome assemblies journal September 2011
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth journal April 2012
PEAR: a fast and accurate Illumina Paired-End reAd mergeR journal October 2013
Building Phylogenetic Trees from Molecular Data with MEGA journal March 2013
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy journal April 2011
Burkholderia zhejiangensis sp. nov., a methyl-parathion-degrading bacterium isolated from a wastewater-treatment system journal June 2012
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes journal May 2015
MEGAN analysis of metagenomic data journal February 2007
Temporal and spatial influences incur reconfiguration of Arctic heathland soil bacterial community structure: Spatio-temporal dynamics of Arctic soil bacteria journal September 2015
Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland journal November 2012
Enhanced root exudation stimulates soil nitrogen transformations in a subalpine coniferous forest under experimental warming journal April 2013
Circumpolar assessment of permafrost C quality and its vulnerability over time using long-term incubation data journal October 2013
Effects of experimental warming of air, soil and permafrost on carbon balance in Alaskan tundra: WARMING OF ALASKAN TUNDRA journal February 2011
Isolation of bacterial strains able to metabolize lignin from screening of environmental samples journal June 2012
The core microbiome bonds the Alpine bog vegetation to a transkingdom metacommunity journal September 2015
Specificity and Stability in Topology of Protein Networks journal May 2002
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy journal June 2007
Microbes in High Arctic Snow and Implications for the Cold Biosphere journal April 2011
Characterization of an extracellular lignin peroxidase of the lignocellulolytic actinomycete Streptomyces viridosporus. journal January 1988
DNA recovery from soils of diverse composition. journal January 1996
Improved Culturability of Soil Bacteria and Isolation in Pure Culture of Novel Members of the Divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia journal May 2002
BLAST+: architecture and applications journal January 2009
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data journal September 2010
Molecular ecological network analyses journal January 2012
Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis journal June 2015
Genetic and Biochemical Investigations on Bacterial Catabolic Pathways for Lignin-Derived Aromatic Compounds journal January 2007
Decomposition of recalcitrant carbon under experimental warming in boreal forest journal June 2017
Microbial Community Composition and Function Across an Arctic Tundra Landscape journal July 2006
Vertical transmission explains the specific Burkholderia pattern in Sphagnum mosses at multi-geographic scale journal January 2013
Long-term forest soil warming alters microbial communities in temperate forest soils journal February 2015
Two decades of warming increases diversity of a potentially lignolytic bacterial community journal May 2015
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities journal January 2015

Similar Records

Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community
Journal Article · Thu Jan 16 19:00:00 EST 2020 · Microbiome · OSTI ID:1631626

Short-term warming increased soil heterotrophic respiration due to enhanced active microbial community
Journal Article · Tue Aug 05 20:00:00 EDT 2025 · Plant and Soil · OSTI ID:2586868

Related Subjects