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Complete genome sequence of ‘Thermobaculum terrenum’ type strain (YNP1T)

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.1153107· OSTI ID:1630546
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  1. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  2. American Type Culture Collection (ATCC), Manassas, VA (United States)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  4. Los Alamos National Lab. (LANL), Los Alamos, NM (United States); USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  5. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  6. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  7. German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  8. Montana State Univ., Bozeman, MN (United States)
  9. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
  10. German Collection of Microorganism and Cell Cultures, Braunschweig (Germany)
+ Show Author Affiliations
'Thermobaculum terrenum' Botero et al. 2004 is the sole species within the proposed genus 'Thermobaculum'. Strain YNP1(T) is the only cultivated member of an acid tolerant, extremely thermophilic species belonging to a phylogenetically isolated environmental clone group within the phylum Chloroflexi. At present, the name 'Thermobaculum terrenum' is not yet validly published as it contravenes Rule 30 (3a) of the Bacteriological Code. The bacterium was isolated from a slightly acidic extreme thermal soil in Yellowstone National Park, Wyoming (USA). Depending on its final taxonomic allocation, this is likely to be the third completed genome sequence of a member of the class Thermomicrobia and the seventh type strain genome from the phylum Chloroflexi. The 3,101,581 bp long genome with its 2,872 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231; AC05-00OR22725; AC52-07NA27344
OSTI ID:
1630546
Alternate ID(s):
OSTI ID: 1032824
Journal Information:
Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 2 Vol. 3; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

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Cited By (4)

Microbial diversity of thermophiles with biomass deconstruction potential in a foliage‐rich hot spring journal March 2018
Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov. journal August 2012
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling journal January 2013
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T) journal October 2011

Figures / Tables (8)

Figure 1(p. 3)figure Figure 1
Figure 2(p. 4)figure Figure 2
Table 1(p. 5)table Table 1
Table 2(p. 6)table Table 2
Figure 3(p. 7)figure Figure 3
Figure 4(p. 8)figure Figure 4
Table 3(p. 8)table Table 3
Table 4(p. 9)table Table 4

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Chloroflexi
GEBA
Gram-positive
Incertae sedis
extreme thermal soil
non-spore-forming
nonmotile
obligate aerobe
thermoacidophile