Draft Genome Sequence of Anoxybacillus suryakundensis Strain JS1T (DSM 27374T) Isolated from a Hot Spring in Jharkhand, India

Deep, Kamal; Poddar, Abhijit; Whitman, William B.; Das, Subrata K.

doi:10.1128/genomeA.00824-16

Draft Genome Sequence of Anoxybacillus suryakundensis Strain JS1^T (DSM 27374^T) Isolated from a Hot Spring in Jharkhand, India

Journal Article · Thu Aug 11 00:00:00 EDT 2016 · Genome Announcements

DOI:https://doi.org/10.1128/genomeA.00824-16· OSTI ID:1629686

Deep, Kamal ^[1]; Poddar, Abhijit ^[2]; Whitman, William B. ^[3]; Das, Subrata K. ^[2]

Inst. of Life Sciences, Bhubaneswar (India). Dept. of Biotechnology; DOE/OSTI
Inst. of Life Sciences, Bhubaneswar (India). Dept. of Biotechnology
Univ. of Georgia, Athens, GA (United States). Dept. of Microbiology

Anoxybacillus suryakundensis strain JS1^T, a facultative anaerobic, moderately thermophilic, alkalitolerant bacterium, was isolated from a hot spring. The estimated genome is 2.6 Mb and encodes 2,668 proteins.

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; Government of India

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1629686

Journal Information:: Genome Announcements, Journal Name: Genome Announcements Journal Issue: 4 Vol. 4; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (8)

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia Nature Methods, Vol. 7, Issue 6 https://doi.org/10.1038/nmeth.1457	journal	May 2010
High-quality draft assemblies of mammalian genomes from massively parallel sequence data Gnerre, S.; MacCallum, I.; Przybylski, D. Proceedings of the National Academy of Sciences, Vol. 108, Issue 4 https://doi.org/10.1073/pnas.1017351108	journal	December 2010
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence Lowe, Todd M.; Eddy, Sean R. Nucleic Acids Research, Vol. 25, Issue 5 https://doi.org/10.1093/nar/25.5.0955	journal	March 1997
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB Pruesse, E.; Quast, C.; Knittel, K. Nucleic Acids Research, Vol. 35, Issue 21 https://doi.org/10.1093/nar/gkm864	journal	November 2007
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs Zerbino, D. R.; Birney, E. Genome Research, Vol. 18, Issue 5 https://doi.org/10.1101/gr.074492.107	journal	February 2008
Prodigal: prokaryotic gene recognition and translation initiation site identification Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F. BMC Bioinformatics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2105-11-119	journal	March 2010
Anoxybacillus suryakundensis sp. nov, a Moderately Thermophilic, Alkalitolerant Bacterium Isolated from Hot Spring at Jharkhand, India Deep, Kamal; Poddar, Abhijit; Das, Subrata K. PLoS ONE, Vol. 8, Issue 12 https://doi.org/10.1371/journal.pone.0085493	journal	December 2013
The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes Mavromatis, Konstantinos; Ivanova, Natalia N.; Chen, I-Min A. Standards in Genomic Sciences, Vol. 1, Issue 1 https://doi.org/10.4056/sigs.632	journal	July 2009

Cited By (1)

Identification and sequence analyses of novel lipase encoding novel thermophillic bacilli isolated from Armenian geothermal springs Shahinyan, Grigor; Margaryan, Armine; Panosyan, Hovik BMC Microbiology, Vol. 17, Issue 1 https://doi.org/10.1186/s12866-017-1016-4	journal	May 2017

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