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Draft Genome Sequence of Comamonas thiooxydans Strain S23T (DSM 17888 T), a Thiosulfate-Oxidizing Bacterium Isolated from a Sulfur Spring in India

Journal Article · · Genome Announcements
 [1];  [2];  [3];  [2]
  1. Inst. of Life Sciences, Bhubaneswar (India). Dept. of Biotechnology; DOE/OSTI
  2. Inst. of Life Sciences, Bhubaneswar (India). Dept. of Biotechnology
  3. Univ. of Georgia, Athens, GA (United States). Dept. of Microbiology

The genus Comamonas contains species isolated from various environments, such as termite guts, wetlands, activated sludge, soil, humans, and fresh water. Here, we report the draft genome sequence of Comamonas thiooxydans strain S23Tcapable of oxidizing thiosulfate under mixotrophic growth conditions. Based upon draft genome sequencing, the genome is 5.3 Mb and encodes 4,767 proteins. The Comamonas thiooxydans whole-genome sequence will help understand the metabolic diversity in sulfur oxidation pathways.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1629637
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Journal Issue: 4 Vol. 4; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (11)

Thiosulfate Oxidation by Comamonas sp. S23 Isolated from a Sulfur Spring journal February 2009
Characterization of Comamonas thiooxidans sp. nov., and Comparison of Thiosulfate Oxidation with Comamonas testosteroni and Comamonas composti journal February 2010
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes journal May 2010
High-quality draft assemblies of mammalian genomes from massively parallel sequence data journal December 2010
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence journal March 1997
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB journal November 2007
List of new names and new combinations previously effectively, but not validly, published – Validation List No. 141 journal September 2011
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
Solexa Ltd journal June 2004
The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes journal July 2009

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