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MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment

Journal Article · · The ISME Journal
 [1];  [2];  [3];  [4];  [5];  [5];  [2];  [6];  [7];  [7];  [7];  [8];  [9];  [10];  [11]
  1. Argonne National Lab. (ANL), Argonne, IL (United States). Mathematics and Computer Science Division; DOE/OSTI
  2. Argonne National Lab. (ANL), Argonne, IL (United States). Mathematics and Computer Science Division
  3. Max Planck Inst. for Marine Microbiology, Bremen (Germany)
  4. Building Ecology, Santa Cruz, CA (United States)
  5. Univ. of Colorado, Boulder, CO (United States). Dept. of Computer Science
  6. Univ. of California, Davis, CA (United States). Davis Genome Center
  7. Marine Biological Laboratory, Woods Hole, MA (United States)
  8. Univ. of California, Riverside, CA (United States)
  9. Univ. of Colorado, Boulder, CO (United States). Dept. of Computer Science; Howard Hughes Medical Inst., Chevy Chase, MD (United States)
  10. Argonne National Lab. (ANL), Argonne, IL (United States). Mathematics and Computer Science Division; Argonne National Lab. (ANL), Argonne, IL (United States). Inst. for Genomics and Systems Biology
  11. Univ. of Maryland Baltimore County (UMBC), Baltimore, MD (United States). School of Medicine. Inst. for Genome Sciences. Dept. of Epidemiology and Public Health
The composition of indoor microbial communities has the potential to profoundly affect human health. A number of factors within a building or room can alter the microbial abundance and diversity, such as occupancy, temperature and humidity, which in turn impacts indoor air quality.
Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
Alfred P. Sloan Foundation; USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
OSTI ID:
1629371
Journal Information:
The ISME Journal, Journal Name: The ISME Journal Journal Issue: 1 Vol. 8; ISSN 1751-7362
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English

References (9)

Defining seasonal marine microbial community dynamics journal August 2011
Architectural design influences the diversity and structure of the built environment microbiome journal January 2012
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications journal May 2011
QIIME allows analysis of high-throughput community sequencing data journal April 2010
BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata journal December 2011
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes journal September 2008
The Genomic Standards Consortium journal June 2011
Human Occupancy as a Source of Indoor Airborne Bacteria journal April 2012
Home Life: Factors Structuring the Bacterial Diversity Found within and between Homes journal May 2013

Cited By (22)

A novel marine mesocosm facility to study global warming, water quality, and ocean acidification journal September 2015
The cervical microbiota in reproductive-age South African women with and without human papillomavirus infection journal June 2019
Erratum: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea journal July 2018
High-order species interactions shape ecosystem diversity journal August 2016
Anaerobic hydrocarbon degradation in candidate phylum ‘Atribacteria’ (JS1) inferred from genomics journal June 2019
Long-term nitrogen addition affects the phylogenetic turnover of soil microbial community responding to moisture pulse journal December 2017
Contribution of mono and polysaccharides to heterotrophic N2 fixation at the eastern Mediterranean coastline journal June 2016
Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomes journal December 2016
Alteration of the fecal microbiota and serum metabolite profiles in dogs with idiopathic inflammatory bowel disease journal January 2015
Yeast culture dietary supplementation modulates gut microbiota, growth and biochemical parameters of grass carp journal March 2018
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation journal September 2016
Microbiota of the indoor environment: a meta-analysis journal October 2015
The roles of the outdoors and occupants in contributing to a potential pan-microbiome of the built environment: a review journal May 2016
Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate communities journal February 2020
MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources journal October 2016
microBEnet: Lessons Learned from Building an Interdisciplinary Scientific Community in the Online Sphere journal June 2014
Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB) journal March 2020
Transmission of Airborne Bacteria across Built Environments and Its Measurement Standards: A Review journal November 2017
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea journal August 2017
MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis journal September 2017
Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden) journal September 2016
Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK) journal January 2018

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