Genome Sequence of Porphyromonas gingivalis Strain 381

Chastain-Gross, Ryan P.; Xie, Gary; Bélanger, Myriam; Kumar, Dibyendu; Whitlock, Joan A.; Liu, Li; Raines, Sarah M.; Farmerie, William G.; Daligault, Hajnalka E.; Han, Cliff S.; Brettin, Thomas S.; Progulske-Fox, Ann

doi:10.1128/genomeA.01467-16

Genome Sequence of Porphyromonas gingivalis Strain 381

Journal Article · Thu Jan 12 00:00:00 EST 2017 · Genome Announcements

DOI:https://doi.org/10.1128/genomeA.01467-16· OSTI ID:1629318

Chastain-Gross, Ryan P. ^[1]; Xie, Gary ^[2]; Bélanger, Myriam ^[3]; Kumar, Dibyendu ^[4]; Whitlock, Joan A. ^[3]; Liu, Li ^[4]; Raines, Sarah M. ^[5]; Farmerie, William G. ^[4]; Daligault, Hajnalka E. ^[2]; Han, Cliff S. ^[2]; Brettin, Thomas S. ^[2]; Progulske-Fox, Ann ^[3]

Univ. of Florida, Gainesville, FL (United States). Dept. of Oral Biology; Univ. of Florida, Gainesville, FL (United States). Dept. of Molecular Microbiology; DOE/OSTI
Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Bioscience Division. Bioenergy and Biome Sciences (B-11)
Univ. of Florida, Gainesville, FL (United States). Dept. of Oral Biology; Univ. of Florida, Gainesville, FL (United States). Dept. of Molecular Microbiology
Univ. of Florida, Gainesville, FL (United States). Interdisciplinary Center for Biotechnology Research
Univ. of Florida, Gainesville, FL (United States). Dept. of Oral Biology

Porphyromonas gingivalis is associated with both oral and systemic diseases. Strain-specific P. gingivalis invasion phenotypes do not reliably predict disease presentation during in vivo studies. Here, we present the genome sequence of 381, a common laboratory strain, with a single contig of 2,378,872 bp and a G+C content of 48.36%.

View Accepted Manuscript (DOE)

Research Organization:: Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division

Grant/Contract Number:: AC52-06NA25396

OSTI ID:: 1629318

Journal Information:: Genome Announcements, Journal Name: Genome Announcements Journal Issue: 2 Vol. 5; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (31)

Genetic Manipulation of Porphyromonas gingivalis Bélanger, Myriam; Rodrigues, Paulo; Progulske‐Fox, Ann Current Protocols in Microbiology, Vol. 5, Issue 1 https://doi.org/10.1002/9780471729259.mc13c02s05	journal	June 2007
Association of red complex, A. actinomycetemcomitans and non-oral bacteria with periodontal diseases da Silva-Boghossian, Carina Maciel; do Souto, Renata Martins; Luiz, Ronir R. Archives of Oral Biology, Vol. 56, Issue 9 https://doi.org/10.1016/j.archoralbio.2011.02.009	journal	September 2011
Genome sequencing in microfabricated high-density picolitre reactors Margulies, Marcel; Egholm, Michael; Altman, William E. Nature, Vol. 437, Issue 7057, p. 376-380 https://doi.org/10.1038/nature03959	journal	July 2005
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia Nature Methods, Vol. 7, Issue 6 https://doi.org/10.1038/nmeth.1457	journal	May 2010
Determination of the Genome Sequence of Porphyromonas gingivalis Strain ATCC 33277 and Genomic Comparison with Strain W83 Revealed Extensive Genome Rearrangements in P. gingivalis Naito, M.; Hirakawa, H.; Yamashita, A. DNA Research, Vol. 15, Issue 4 https://doi.org/10.1093/dnares/dsn013	journal	May 2008
IMG: the integrated microbial genomes database and comparative analysis system Markowitz, V. M.; Chen, I. -M. A.; Palaniappan, K. Nucleic Acids Research, Vol. 40, Issue D1 https://doi.org/10.1093/nar/gkr1044	journal	December 2011
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs Zerbino, D. R.; Birney, E. Genome Research, Vol. 18, Issue 5 https://doi.org/10.1101/gr.074492.107	journal	February 2008
Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment Ewing, Brent; Hillier, LaDeana; Wendl, Michael C. Genome Research, Vol. 8, Issue 3 https://doi.org/10.1101/gr.8.3.175	journal	March 1998
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities Ewing, Brent; Green, Phil Genome Research, Vol. 8, Issue 3 https://doi.org/10.1101/gr.8.3.186	journal	March 1998
Consed: A Graphical Tool for Sequence Finishing Gordon, David; Abajian, Chris; Green, Phil Genome Research, Vol. 8, Issue 3 https://doi.org/10.1101/gr.8.3.195	journal	March 1998
Virulence of six capsular serotypes of Porphyromonas gingivalis in a mouse model Laine, M. L.; Winkelhoff, A. J. Oral Microbiology and Immunology, Vol. 13, Issue 5 https://doi.org/10.1111/j.1399-302X.1998.tb00714.x	journal	October 1998
Invasion of endothelial and epithelial cells by strains of Porphyromonas gingivalis Dorn, Brian R.; Burks, Jacob N.; Seifert, Kyle N. FEMS Microbiology Letters, Vol. 187, Issue 2 https://doi.org/10.1111/j.1574-6968.2000.tb09150.x	journal	June 2000
A study of the bacteria associated with advancing periodontitis in man Tanner, A. C. R.; Haffer, C.; Bratthall, G. T. Journal of Clinical Periodontology, Vol. 6, Issue 5 https://doi.org/10.1111/j.1600-051X.1979.tb01931.x	journal	October 1979
Microbial complexes in subgingival plaque Socransky, S. S.; Haffajee, A. D.; Cugini, M. A. Journal of Clinical Periodontology, Vol. 25, Issue 2, p. 134-144 https://doi.org/10.1111/j.1600-051X.1998.tb02419.x	journal	February 1998
Comparative virulence of periodontopathogens in a mouse abscess model Ebersole, Jl; Kesavaln, L.; Schneider, Sl Oral Diseases, Vol. 1, Issue 3 https://doi.org/10.1111/j.1601-0825.1995.tb00174.x	journal	September 1995
Identification and Characterization of the Capsular Polysaccharide (K-Antigen) Locus of Porphyromonas gingivalis Aduse-Opoku, Joseph; Slaney, Jennifer M.; Hashim, Ahmed Infection and Immunity, Vol. 74, Issue 1 https://doi.org/10.1128/IAI.74.1.449-460.2006	journal	January 2006
Complete Genome Sequence of the Oral Pathogenic Bacterium Porphyromonas gingivalis Strain W83 Nelson, Karen E.; Fleischmann, Robert D.; DeBoy, Robert T. Journal of Bacteriology, Vol. 185, Issue 18 https://doi.org/10.1128/JB.185.18.5591-5601.2003	journal	September 2003
Selected characteristics of pathogenic and nonpathogenic strains of Bacteroides gingivalis. Grenier, D.; Mayrand, D. Journal of Clinical Microbiology, Vol. 25, Issue 4 https://doi.org/10.1128/JCM.25.4.738-740.1987	journal	January 1987
Biology of asaccharolytic black-pigmented Bacteroides species. Mayrand, D.; Holt, S. C. Microbiological Reviews, Vol. 52, Issue 1 https://doi.org/10.1128/MMBR.52.1.134-152.1988	journal	January 1988
Genome Sequence of Porphyromonas gingivalis Strain A7436 Chastain-Gross, Ryan P.; Xie, Gary; Bélanger, Myriam Genome Announcements, Vol. 3, Issue 5 https://doi.org/10.1128/genomeA.00927-15	journal	September 2015
Genome Sequence of Porphyromonas gingivalis Strain HG66 (DSM 28984) Siddiqui, H.; Yoder-Himes, D. R.; Mizgalska, D. Genome Announcements, Vol. 2, Issue 5 https://doi.org/10.1128/genomeA.00947-14	journal	September 2014
Genome Sequence of Porphyromonas gingivalis Strain AJW4 Xie, Gary; Chastain-Gross, Ryan P.; Bélanger, Myriam Genome Announcements, Vol. 3, Issue 6 https://doi.org/10.1128/genomeA.01304-15	journal	November 2015
Selected characteristics of pathogenic and nonpathogenic strains of Bacteroides gingivalis. Grenier, D.; Mayrand, D. Journal of Clinical Microbiology, Vol. 25, Issue 4 https://doi.org/10.1128/jcm.25.4.738-740.1987	journal	January 1987
Biology of asaccharolytic black-pigmented Bacteroides species Mayrand, D.; Holt, S. C. Microbiological Reviews, Vol. 52, Issue 1 https://doi.org/10.1128/mr.52.1.134-152.1988	journal	March 1988
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes Meyer, F.; Paarmann, D.; D'Souza, M. BMC Bioinformatics, Vol. 9, Issue 1 https://doi.org/10.1186/1471-2105-9-386	journal	September 2008
Porphyromonas gingivalis and the pathogenesis of rheumatoid arthritis: analysis of various compartments including the synovial tissue Totaro, Michele; Cattani, Paola; Ria, Francesco Arthritis Research & Therapy, Vol. 15, Issue 3 https://doi.org/10.1186/ar4243	journal	January 2013
Porphyromonas gingivalis Strain Specific Interactions with Human Coronary Artery Endothelial Cells: A Comparative Study Rodrigues, Paulo H.; Reyes, Leticia; Chadda, Amandeep S. PLoS ONE, Vol. 7, Issue 12 https://doi.org/10.1371/journal.pone.0052606	journal	December 2012
Microbial Diversity Similarities in Periodontal Pockets and Atheromatous Plaques of Cardiovascular Disease Patients Serra e. Silva Filho, Wagner; Casarin, Renato C. V.; Nicolela Junior, Eduardo L. PLoS ONE, Vol. 9, Issue 10 https://doi.org/10.1371/journal.pone.0109761	journal	October 2014
Porphyromonas gingivalis within Placental Villous Mesenchyme and Umbilical Cord Stroma Is Associated with Adverse Pregnancy Outcome Vanterpool, Sizzle F.; Been, Jasper V.; Houben, Michiel L. PLOS ONE, Vol. 11, Issue 1 https://doi.org/10.1371/journal.pone.0146157	journal	January 2016
Comparisons of Subgingival Microbial Profiles of Refractory Periodontitis, Severe Periodontitis, and Periodontal Health Using the Human Oral Microbe Identification Microarray Colombo, Ana Paula V.; Boches, Susan K.; Cotton, Sean L. Journal of Periodontology, Vol. 80, Issue 9 https://doi.org/10.1902/jop.2009.090185	journal	September 2009
Porphyromonas gingivalis : a clonal pathogen?: Diversities in housekeeping genes and the major fimbriae gene Enersen, Morten Journal of Oral Microbiology, Vol. 3, Issue 1 https://doi.org/10.3402/jom.v3i0.8487	journal	January 2011

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Citrullination mediated by PPAD constrains biofilm formation in P. gingivalis strain 381 Vermilyea, Danielle M.; Ottenberg, Gregory K.; Davey, Mary E. npj Biofilms and Microbiomes, Vol. 5, Issue 1 https://doi.org/10.1038/s41522-019-0081-x	journal	February 2019
The Distinct Immune-Stimulatory Capacities of Porphyromonas gingivalis Strains 381 and ATCC 33277 Are Determined by the fimB Allele and Gingipain Activity Coats, Stephen R.; Kantrong, Nutthapong; To, Thao T. Infection and Immunity, Vol. 87, Issue 12 https://doi.org/10.1128/iai.00319-19	journal	September 2019
Draft Genome Sequence of Porphyromonas gingivalis Strain 381 Okayama (381OKJP) Stock Culture May, Anthony C.; Maeda, Hiroshi; Kurihara, Hidemi Microbiology Resource Announcements, Vol. 8, Issue 9 https://doi.org/10.1128/mra.01641-18	journal	February 2019
Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains Acuña-Amador, Luis; Primot, Aline; Cadieu, Edouard BMC Genomics, Vol. 19, Issue 1 https://doi.org/10.1186/s12864-017-4429-4	journal	January 2018

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