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Draft Genome Sequence of Medium-Chain-Length Polyhydroxyalkanoate-Producing Pseudomonas putida Strain LS46

Journal Article · · Genome Announcements
 [1];  [2];  [3];  [3];  [4];  [4];  [5];  [2]
  1. Univ. of Manitoba, Winnipeg, MB (Canada). Dept. of Biosystems Engineering; DOE/OSTI
  2. Univ. of Manitoba, Winnipeg, MB (Canada). Dept. of Biosystems Engineering
  3. Univ. of Manitoba, Winnipeg, MB (Canada). Dept. of Plant Science
  4. Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Bioscience Division
  5. Univ. of Manitoba, Winnipeg, MB (Canada). Dept. of Microbiology

We describe the draft genome sequence of Pseudomonas putida strain LS46, a novel isolate that synthesizes medium-chainlength polyhydroxyalkanoates. The draft genome of P. putida LS46 consists of approximately 5.86 million bp, with a G+C content of 61.69%. A total of 5,316 annotated genes and 5,219 coding sequences (CDS) were identified.

Research Organization:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
OSTI ID:
1629283
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Journal Issue: 2 Vol. 1; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (12)

Occurrence, synthesis and medical application of bacterial polyhydroxyalkanoate journal December 2001
Genome sequencing in microfabricated high-density picolitre reactors journal July 2005
Bacterial polymers: biosynthesis, modifications and applications journal June 2010
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes journal October 2010
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Base-Calling of Automated Sequencer Traces Using Phred.  I. Accuracy Assessment journal March 1998
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities journal March 1998
Consed: A Graphical Tool for Sequence Finishing journal March 1998
Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida journal March 2011
Pseudomonas genomes: diverse and adaptable journal July 2011
Kinetics of medium-chain-length polyhydroxyalkanoate production by a novel isolate of Pseudomonas putida LS46 journal August 2012
Solexa Ltd journal June 2004

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