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Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.4718645· OSTI ID:1628683
 [1];  [2];  [3];  [4];  [5];  [6];  [7];  [2];  [8];  [9];  [9];  [8];  [10];  [11];  [12];  [13];  [12];  [10];  [10];  [14] more »;  [15];  [14];  [4] « less
  1. Wageningen Univ. (Netherlands). Lab. of Microbiology; DOE/OSTI
  2. Russian Academy of Sciences (RAS), Moscow (Russian Federation). Wingradsky Inst. of Microbiology
  3. Univ. of Minho, Braga (Portugal). Centre of Biological Engineering
  4. Wageningen Univ. (Netherlands). Lab. of Microbiology; Univ. of Minho, Braga (Portugal). Centre of Biological Engineering
  5. Universidade Nova de Lisboa, Oeiras (Portugal). Instituto de Tecnologia Quimica e Biologica
  6. Univ. of Amsterdam (Netherlands). Inst. for Biodiversity and Ecosystem Dynamics. Dept. of Aquatic microbiology
  7. Bremen Inst. for Materials Testing, Bremen (Germany). Dept. of Microbiology
  8. Wageningen Univ. (Netherlands). Lab. of Systems and Synthetic Biology
  9. Wageningen Univ. (Netherlands). Lab. of Microbiology
  10. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Bioscience Division
  11. St. Petersburg State Univ. (Russian Federation). Theodosius Dobzhansky Center for Genome Bioinformatics; St. Petersburg Academic Univ. (Russian Federation). Algorithmic Biology Lab.
  12. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  13. Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Bioscience Division
  14. Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  15. HZI – Helmholtz Centre for Infection Research, Braunschweig (Germany)
+ Show Author Affiliations
Desulfotomaculum nigrificans and D. carboxydivorans are moderately thermophilic members of the polyphyletic spore-forming genus Desulfotomaculum in the family Peptococcaceae. They are phylogenetically very closely related and belong to ‘subgroup a’ of the Desulfotomaculum cluster 1. D. nigrificans and D. carboxydivorans have a similar growth substrate spectrum; they can grow with glucose and fructose as electron donors in the presence of sulfate. Additionally, both species are able to ferment fructose, although fermentation of glucose is only reported for D. carboxydivorans. D. nigrificans is able to grow with 20% carbon monoxide (CO) coupled to sulfate reduction, while D. carboxydivorans can grow at 100% CO with and without sulfate. Hydrogen is produced during growth with CO by D. carboxydivorans. Here we present a summary of the features of D. nigrificans and D. carboxydivorans together with the description of the complete genome sequencing and annotation of both strains. Moreover, we compared the genomes of both strains to reveal their differences. This comparison led us to p
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1628683
Journal Information:
Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 3 Vol. 9; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

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Cited By (14)

Engineering of vitamin prototrophy in Clostridium ljungdahlii and Clostridium autoethanogenum journal April 2019
Enrichment of syngas-converting communities from a multi-orifice baffled bioreactor journal November 2017
Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile journal September 2017
Exemplar Abstract for Desulfotomaculum nigrificans (Werkman and Weaver 1927) Campbell and Postgate 1965 (Approved Lists 1980) emend. Visser et al. 2014. dataset January 2013
Exemplar Abstract for Desulfotomaculum carboxydivorans Parshina et al. 2005. dataset January 2013
Nomenclature Abstract for Desulfotomaculum nigrificans (Werkman and Weaver 1927) Campbell and Postgate 1965 (Approved Lists 1980) emend. Visser et al. 2014. dataset January 2013
Nomenclature Abstract for Desulfotomaculum carboxydivorans Parshina et al. 2005. dataset January 2013
Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-Positive Sulfate- and Metal-Reducing Bacterium journal February 2016
Genomic Insights Into Energy Metabolism of Carboxydocella thermautotrophica Coupling Hydrogenogenic CO Oxidation With the Reduction of Fe(III) Minerals journal August 2018
Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes journal September 2019
Effect of Sulfate on Carbon Monoxide Conversion by a Thermophilic Syngas-Fermenting Culture Dominated by a Desulfofundulus Species journal November 2020
Phylogenetic comparison of Desulfotomaculum species of subgroup 1a and description of Desulfotomaculum reducens sp. nov. journal February 2016
Review of Desulfotomaculum species and proposal of the genera Desulfallas gen. nov., Desulfofundulus gen. nov., Desulfofarcimen gen. nov. and Desulfohalotomaculum gen. nov. journal September 2018
Exemplar Abstract for Desulfotomaculum carboxydivorans Parshina et al. 2005. dataset January 2013

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Related Subjects

Peptococcaceae
59 BASIC BIOLOGICAL SCIENCES
Clostridiales
Genetics & Heredity
Microbiology
Thermophilic spore-forming anaerobes
carboxydotrophic
sulfate reduction