Community Structure and Function of High-Temperature Chlorophototrophic Microbial Mats Inhabiting Diverse Geothermal Environments

Klatt, Christian G.; Inskeep, William P.; Herrgard, Markus J.; Jay, Zackary J.; Rusch, Douglas B.; Tringe, Susannah G.; Niki Parenteau, M.; Ward, David M.; Boomer, Sarah M.; Bryant, Donald A.; Miller, Scott R.

doi:10.3389/fmicb.2013.00106

Title: Community Structure and Function of High-Temperature Chlorophototrophic Microbial Mats Inhabiting Diverse Geothermal Environments

Journal Article · Tue Jan 01 00:00:00 EST 2013 · Frontiers in Microbiology

DOI:https://doi.org/10.3389/fmicb.2013.00106· OSTI ID:1628088

Klatt, Christian G. ^[1]; Inskeep, William P. ^[1]; Herrgard, Markus J. ^[2]; Jay, Zackary J. ^[1]; Rusch, Douglas B. ^[3]; Tringe, Susannah G. ^[4]; Niki Parenteau, M. ^[5]; Ward, David M. ^[1]; Boomer, Sarah M. ^[6]; Bryant, Donald A. ^[7]; Miller, Scott R. ^[8]

Montana State Univ., Bozeman, MT (United States). Dept. of Land Resources and Environmental Sciences; Montana State Univ., Bozeman, MT (United States). Thermal Biology Inst.
Technical Univ. of Denmark, Horsholm (Denmark). Novo Nordisk Foundation Center for Biosustainability
Indiana Univ., Bloomington, IN (United States). Center for Genomics and Bioinformatics
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Search for Extraterrestrial Intelligence Inst., Mountain View, CA (United States); NASA Ames Research Center (ARC), Moffett Field, Mountain View, CA (United States)
Western Oregon Univ., Monmouth, OR (United States)
Pennsylvania State Univ., University Park, PA (United States). Dept. of Biochemistry and Molecular Biology; Montana State Univ., Bozeman, MT (United States). Dept. of Chemistry and Biochemistry
Univ. of Montana, Missoula, MT (United States). Dept. of Biological Sciences

Six phototrophic microbial mat communities from different geothermal springs (YNP) were studied using metagenome sequencing and geochemical analyses. The primary goals of this work were to determine differences in community composition of high-temperature phototrophic mats distributed across the Yellowstone geothermal ecosystem, and to identify metabolic attributes of predominant organisms present in these communities that may correlate with environmental attributes important in niche differentiation. Random shotgun metagenome sequences from six phototrophic communities (average ~53 Mbp/site) were subjected to multiple taxonomic, phylogenetic, and functional analyses. All methods, including G + C content distribution, MEGAN analyses, and oligonucleotide frequency based clustering, provided strong support for the dominant community members present in each site. Cyanobacteria were only observed in non-sulfidic sites; de novo assemblies were obtained for Synechococcus-like populations at Chocolate Pots (CP_7) and Fischerella-like populations at White Creek (WC_6). Chloroflexi-like sequences (esp. Roseiflexus and/or Chloroflexus spp.) were observed in all six samples and contained genes involved in bacteriochlorophyll biosynthesis and the 3-hydroxypropionate carbon fixation pathway. Other major sequence assemblies were obtained for a Chlorobiales population from CP_7 (proposed family Thermochlorobacteriaceae), and an anoxygenic, sulfur-oxidizing Thermochromatium-like (Gamma-proteobacteria) population from Bath Lake Vista Annex (BLVA_20). Additional sequence coverage is necessary to establish more complete assemblies of other novel bacteria in these sites (e.g., Bacteroidetes and Firmicutes); however, current assemblies suggested that several of these organisms play important roles in heterotrophic and fermentative metabolisms. Definitive linkages were established between several of the dominant phylotypes present in these habitats and important functional processes such as photosynthesis, carbon fixation, sulfur oxidation, and fermentation.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER). Earth and Environmental Systems Science Division

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1628088

Journal Information:: Frontiers in Microbiology, Vol. 4; ISSN 1664-302X

Publisher:: Frontiers Research FoundationCopyright Statement

Country of Publication:: United States

Language:: English

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The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing Thiel, Vera; Wood, Jason M.; Olsen, Millie T. Frontiers in Microbiology, Vol. 7 https://doi.org/10.3389/fmicb.2016.00919	journal	June 2016
Physiological and Metagenomic Analyses of Microbial Mats Involved in Self-Purification of Mine Waters Contaminated with Heavy Metals Drewniak, Lukasz; Krawczyk, Pawel S.; Mielnicki, Sebastian Frontiers in Microbiology, Vol. 7 https://doi.org/10.3389/fmicb.2016.01252	journal	August 2016
The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses Thiel, Vera; Hügler, Michael; Ward, David M. Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.00943	journal	June 2017
Diurnal Changes in Active Carbon and Nitrogen Pathways Along the Temperature Gradient in Porcelana Hot Spring Microbial Mat Alcamán-Arias, María E.; Pedrós-Alió, Carlos; Tamames, Javier Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.02353	journal	October 2018

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54 ENVIRONMENTAL SCIENCES
59 BASIC BIOLOGICAL SCIENCES
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microbial mats
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functional genomics
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