Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost

Goordial, Jacqueline; Raymond-Bouchard, Isabelle; Ronholm, Jennifer; Shapiro, Nicole; Woyke, Tanja; Whyte, Lyle; Bakermans, Corien

doi:10.1186/s40793-015-0043-8

Title: Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost

Journal Article · Thu Sep 03 00:00:00 EDT 2015 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-015-0043-8· OSTI ID:1627068

Goordial, Jacqueline ^[1]; Raymond-Bouchard, Isabelle ^[1]; Ronholm, Jennifer ^[1]; Shapiro, Nicole ^[2]; Woyke, Tanja ^[2]; Whyte, Lyle ^[1]; Bakermans, Corien ^[3]

McGill Univ., Montreal, QC (Canada)
DOE Joint Genome Institute, Walnut Creek, CA (United States)
Pennsylvania State Univ., Altoona College, Altoona, PA (United States)

The actinobacterium Rhodococcus sp. JG-₃ is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderately halotolerant and capable of growth from 30 °C down to at least -5 °C. The 5.28 Mb high-quality-draft genome is arranged into 6 scaffolds, containing 9 contigs and 4998 protein coding genes, with 64 % GC content. Increasing the availability of genome sequences from cold-adapted species is crucial to gaining a better understanding of the molecular traits of cold adaptation in microbes.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1627068

Journal Information:: Standards in Genomic Sciences, Vol. 10, Issue 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 8 works

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Actinobacteria and Cyanobacteria Diversity in Terrestrial Antarctic Microenvironments Evaluated by Culture-Dependent and Independent Methods Rego, Adriana; Raio, Francisco; Martins, Teresa P. Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01018	journal	May 2019

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Related Subjects

Genetics & Heredity
Microbiology Rhodococcus<\em> sp. JG-3
Permafrost
Eurypsychrophile
Dry valleys
Antarctica

Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost Goordial, Jacqueline; Raymond-Bouchard, Isabelle; Ronholm, Jennifer https://doi.org/10.6084/m9.figshare.c.3618833 The current record is supplemented by this collection	collection	January 2015
Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost Goordial, Jacqueline; Raymond-Bouchard, Isabelle; Ronholm, Jennifer https://doi.org/10.6084/m9.figshare.c.3618833.v1 The current record is supplemented by this collection	collection	January 2015
Additional file 1: Table S1. of Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost Goordial, Jacqueline; Raymond-Bouchard, Isabelle; Ronholm, Jennifer https://doi.org/10.6084/m9.figshare.c.3618833_d1 The current record is supplemented by this text	text	January 2015
Additional file 1: Table S1. of Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost Goordial, Jacqueline; Raymond-Bouchard, Isabelle; Ronholm, Jennifer https://doi.org/10.6084/m9.figshare.c.3618833_d1.v1 The current record is supplemented by this text	text	January 2015