Remediation of the protein data bank archive

Henrick, K.; Feng, Z.; Bluhm, W. F.; Dimitropoulos, D.; Doreleijers, J. F.; Dutta, S.; Flippen-Anderson, J. L.; Ionides, J.; Kamada, C.; Krissinel, E.; Lawson, C. L.; Markley, J. L.; Nakamura, H.; Newman, R.; Shimizu, Y.; Swaminathan, J.; Velankar, S.; Ory, J.; Ulrich, E. L.; Vranken, W.; Westbrook, J.; Yamashita, R.; Yang, H.; Young, J.; Yousufuddin, M.; Berman, H. M.

doi:10.1093/nar/gkm937

Remediation of the protein data bank archive

Journal Article · Mon Dec 10 23:00:00 EST 2007 · Nucleic Acids Research

DOI:https://doi.org/10.1093/nar/gkm937· OSTI ID:1625433

Henrick, K. ^[1]; Feng, Z. ^[2]; Bluhm, W. F. ^[3]; Dimitropoulos, D. ^[4]; Doreleijers, J. F. ^[5]; Dutta, S. ^[2]; Flippen-Anderson, J. L. ^[2]; Ionides, J. ^[4]; Kamada, C. ^[6]; Krissinel, E. ^[4]; Lawson, C. L. ^[2]; Markley, J. L. ^[5]; Nakamura, H. ^[6]; Newman, R. ^[4]; Shimizu, Y. ^[6]; Swaminathan, J. ^[4]; Velankar, S. ^[4]; Ory, J. ^[2]; Ulrich, E. L. ^[5]; Vranken, W. ^[4] more »

European Molecular Biology Lab. (EMBL), Hinxton, Cambridge (United Kingdom). MSD-EBI; DOE/OSTI
Rutgers Univ., Piscataway, NJ (United States). Dept. of Chemistry and Chemical Biology. RCSB Protein Data Bank
Univ. of California, San Diego, CA (United States). The Skaggs School of Pharmacy and Pharmaceutical Sciences. San Diego Supercomputer Center. RCSB Protein Data Bank
European Molecular Biology Lab. (EMBL), Hinxton, Cambridge (United Kingdom). MSD-EBI
Univ. of Wisconsin, Madison, WI (United States). Dept. of Biochemistry. BioMagResBank
Osaka Univ. (Japan). Inst. for Protein Research. PDBj

The Worldwide Protein Data Bank (wwPDB; wwpdb. org) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB archive at ftp:// ftp.wwpdb.org is the repository for the coordinates and related information for more than 47 000 structures, including proteins, nucleic acids and large macromolecular complexes that have been determined using X-ray crystallography, NMR and electron microscopy techniques. The members of the wwPDB–RCSB PDB (USA), MSD-EBI (Europe), PDBj (Japan) and BMRB (USA)–have remediated this archive to address inconsistencies that have been introduced over the years. The scope and methods used in this project are presented.

View Accepted Manuscript (DOE)

Research Organization:: Rutgers Univ., Piscataway, NJ (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; National Institutes of Health (NIH); National Science Foundation (NSF)

OSTI ID:: 1625433

Journal Information:: Nucleic Acids Research, Journal Name: Nucleic Acids Research Journal Issue: suppl_1 Vol. 36; ISSN 0305-1048

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United States

Language:: English

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