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Structural Insight into H‐NOX Gas Sensing and Cognate Signaling Protein Regulation
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The polarizable continuum model (PCM) interfaced with the fragment molecular orbital method (FMO)
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Structural insights into the molecular mechanism of H-NOX activation: Molecular Mechanism of H-NOX Activation
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Algorithm improvements for molecular dynamics simulations
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Computational Study of Methionine Methylation Process Catalyzed by SETD3
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Electron Transfer Dissociation (ETD) of Peptides Containing Intrachain Disulfide Bonds
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Nitric Oxide Modulates Bacterial Biofilm Formation through a Multicomponent Cyclic-di-GMP Signaling Network
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May 2012 |
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Electron capture dissociation of gaseous multiply charged ions by Fourier-transform ion cyclotron resonance
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Characterization and Comparison of Disulfide Linkages and Scrambling Patterns in Therapeutic Monoclonal Antibodies: Using LC-MS with Electron Transfer Dissociation
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Nitric Oxide-Induced Conformational Changes Govern H-NOX and Histidine Kinase Interaction and Regulation in Shewanella oneidensis
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February 2017 |
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ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
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Structural and Functional Evidence Indicates Selective Oxygen Signaling in Caldanaerobacter subterraneus H-NOX
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The Selectivity of Vibrio cholerae H-NOX for Gaseous Ligands Follows the “Sliding Scale Rule” Hypothesis. Ligand Interactions with both Ferrous and Ferric Vc H-NOX
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December 2013 |
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Shewanella oneidensis MR-1 H-NOX Regulation of a Histidine Kinase by Nitric Oxide †
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Discovery of a Nitric Oxide Responsive Quorum Sensing Circuit in Vibrio harveyi
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Probing the Function of Heme Distortion in the H-NOX Family
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Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald
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Long-Time-Step Molecular Dynamics through Hydrogen Mass Repartitioning
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March 2015 |
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ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale
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Parametrized Models of Aqueous Free Energies of Solvation Based on Pairwise Descreening of Solute Atomic Charges from a Dielectric Medium
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Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
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Evolution of the murine gut resistome following broad-spectrum antibiotic treatment
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Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants
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July 2021 |
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Stepwise gating of the Sec61 protein-conducting channel by Sec63 and Sec62
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January 2021 |
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Theoretical study of intramolecular interaction energies during dynamics simulations of oligopeptides by the fragment molecular orbital-Hamiltonian algorithm method
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March 2005 |
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Determination of the transcriptome of Vibrio cholerae during intraintestinal growth and midexponential phase in vitro
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Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases
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Self-limiting nature of seasonal cholera epidemics: Role of host-mediated amplification of phage
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Transmissibility of cholera: In vivo-formed biofilms and their relationship to infectivity and persistence in the environment
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A structural basis for H-NOX signaling in Shewanella oneidensis by trapping a histidine kinase inhibitory conformation
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H-NOX-mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri
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Heme-independent Redox Sensing by the Heme-Nitric Oxide/Oxygen-binding Protein (H-NOX) from Vibrio cholerae
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June 2016 |
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Oxidant Sensing by Reversible Disulfide Bond Formation
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Direct mass spectrometric characterization of disulfide linkages
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March 2018 |
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A rapid, exact curved-wave theory for EXAFS calculations
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Role of Vibrio polysaccharide (vps) genes in VPS production, biofilm formation and Vibrio cholerae pathogenesis
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State-of-the-Art Analysis of Whole X-ray Absorption Spectra
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Increased Levels of Inflammatory Mediators in Children and Adults Infected with Vibrio cholerae O1 and O139
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Comparative Proteomic Analysis Reveals Activation of Mucosal Innate Immune Signaling Pathways during Cholera
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January 2015 |
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Environmental and Genetic Determinants of Biofilm Formation in Paracoccus denitrificans
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September 2017 |
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Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins
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February 2003 |
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Vibrio cholerae Infection of Drosophila melanogaster Mimics the Human Disease Cholera
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Fragment molecular orbital method: an approximate computational method for large molecules
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Electron capture dissociation of gaseous multiply charged ions by Fourier-transform ion cyclotron resonance
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The utility of ETD mass spectrometry in proteomic analysis
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Ligand specificity of H-NOX domains: from sGC to bacterial NO sensors
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April 2005 |
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Simple Approach to Assign Disulfide Connectivity Using Extracted Ion Chromatograms of Electron Transfer Dissociation Spectra
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December 2012 |
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Mass Spectrometric Determination of Disulfide Linkages in Recombinant Therapeutic Proteins Using Online LC−MS with Electron-Transfer Dissociation
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January 2009 |
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Genomic Enzymology: Web Tools for Leveraging Protein Family Sequence–Function Space and Genome Context to Discover Novel Functions
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August 2017 |
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Mapping the H-NOX/HK Binding Interface in Vibrio cholerae by Hydrogen/Deuterium Exchange Mass Spectrometry
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February 2018 |
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Nitric Oxide Regulation of Cyclic di-GMP Synthesis and Hydrolysis in Shewanella woodyi
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February 2012 |
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Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born
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Comparison of simple potential functions for simulating liquid water
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Spatially selective colonization of the arthropod intestine through activation of Vibrio cholerae biofilm formation
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Structural insights into the role of iron–histidine bond cleavage in nitric oxide-induced activation of H-NOX gas sensor proteins
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September 2014 |
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Heme-independent Redox Sensing by the Heme-Nitric Oxide/Oxygen-binding Protein (H-NOX) from Vibrio cholerae
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June 2016 |
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Oxidant Sensing by Reversible Disulfide Bond Formation
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July 2013 |
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Stimulation of biofilm formation by oxidative stress in Campylobacter jejuni under aerobic conditions
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A rapid, exact, curved-wave theory for EXAFS calculations. II. The multiple-scattering contributions
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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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State-of-the-Art Analysis of Whole X-ray Absorption Spectra
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H-NOX regulation of c-di-GMP metabolism and biofilm formation in Legionella pneumophila: H-NOX regulation of biofilms
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July 2010 |
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Comparative Proteomic Analysis Reveals Activation of Mucosal Innate Immune Signaling Pathways during Cholera
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January 2015 |
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Environmental and Genetic Determinants of Biofilm Formation in Paracoccus denitrificans
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September 2017 |