skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Direct Pore Binding as a Mechanism for Isoflurane Inhibition of the Pentameric Ligand-gated Ion Channel ELIC

Journal Article · · Scientific Reports
DOI:https://doi.org/10.1038/srep13833· OSTI ID:1624795
 [1];  [1];  [2];  [3];  [4];  [5];  [6]
  1. Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Anesthesiology
  2. Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Anesthesiology; Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Pharmacology and Chemical Biology
  3. Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Anesthesiology; Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Computational and Systems Biology
  4. SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford Synchrotron Radiation Lightsource (SSRL)
  5. Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Anesthesiology; Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Pharmacology and Chemical Biology; Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Structural Biology
  6. Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Anesthesiology; Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Pharmacology and Chemical Biology; Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States). Dept. of Computational and Systems Biology

Pentameric ligand-gated ion channels (pLGICs) are targets of general anesthetics, but molecular mechanisms underlying anesthetic action remain debatable. We found that ELIC, a pLGIC from Erwinia chrysanthemi, can be functionally inhibited by isoflurane and other anesthetics. Structures of ELIC co-crystallized with isoflurane in the absence or presence of an agonist revealed double isoflurane occupancies inside the pore near T237(6') and A244(13'). A pore-radius contraction near the extracellular entrance was observed upon isoflurane binding. Electrophysiology measurements with a single-point mutation at position 6' or 13' support the notion that binding at these sites renders isoflurane inhibition. Molecular dynamics simulations suggested that isoflurane binding was more stable in the resting than in a desensitized pore conformation. This study presents compelling evidence for a direct pore-binding mechanism of isoflurane inhibition, which has a general implication for inhibitory action of general anesthetics on pLGICs.

Research Organization:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States). Stanford Synchrotron Radiation Lightsource (SSRL)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES); Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-76SF00515; T32GM075770; T32EB009403; P41GM103393; TG-MCB050030N; 01GM056257; R01GM066358
OSTI ID:
1624795
Journal Information:
Scientific Reports, Vol. 5, Issue 1; ISSN 2045-2322
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 25 works
Citation information provided by
Web of Science

References (71)

Multiple binding sites for the general anesthetic isoflurane identified in the nicotinic acetylcholine receptor transmembrane domain journal July 2010
Thiopental is a Competitive Inhibitor at the Human α7 Nicotinic Acetylcholine Receptor journal January 2001
Anesthetic sites and allosteric mechanisms of action on Cys-loop ligand-gated ion channels journal January 2011
MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes journal July 2004
Structural basis for high‐affinity volatile anesthetic binding in a natural 4‐helix bundle protein journal January 2005
General Anesthetic Binding to Neuronal α4β2 Nicotinic Acetylcholine Receptor and Its Effects on Global Dynamics journal September 2009
The n -Alcohol Site in the Nicotinic Receptor Pore Is a Hydrophobic Patch journal December 2000
Crystal structure of a human GABAA receptor journal June 2014
Isoflurane Alters the Structure and Dynamics of GLIC journal October 2011
Identification of Propofol Binding Sites in a Nicotinic Acetylcholine Receptor with a Photoreactive Propofol Analog journal January 2013
Early exposure to common anesthetic agents causes widespread neurodegeneration in the developing rat brain and persistent learning deficits. journal July 2003
Cognitive dysfunction 1-2 years after non-cardiac surgery in the elderly journal November 2000
NMR resolved multiple anesthetic binding sites in the TM domains of the α4β2 nAChR journal February 2013
Extension of the CHARMM general force field to sulfonyl-containing compounds and its utility in biomolecular simulations journal July 2012
NMR Study of Volatile Anesthetic Binding to Nicotinic Acetylcholine Receptors journal February 2000
Effects of Thiopental and Its Optical Isomers on Nicotinic Acetylcholine Receptors journal January 2000
Intravenous Anesthetics Differentially Modulate Ligand-gated Ion Channels journal January 2000
Anesthetic Binding in a Pentameric Ligand-Gated Ion Channel: GLIC journal September 2010
XDS journal January 2010
Structure of the pentameric ligand-gated ion channel ELIC cocrystallized with its competitive antagonist acetylcholine journal January 2012
Anesthesia, Calcium Homeostasis and Alzheimers Disease journal February 2009
Photoaffinity Labeling the Propofol Binding Site in GLIC journal December 2013
Photoaffinity Labeling of Nicotinic Receptors: Diversity of Drug Binding Sites! journal October 2013
Comparative Protein Modelling by Satisfaction of Spatial Restraints journal December 1993
HOLE: A program for the analysis of the pore dimensions of ion channel structural models journal December 1996
Structural basis of open channel block in a prokaryotic pentameric ligand-gated ion channel journal October 2010
Multisite Binding of a General Anesthetic to the Prokaryotic Pentameric Erwinia chrysanthemi Ligand-gated Ion Channel (ELIC) journal January 2013
Molecular and cellular mechanisms of general anaesthesia journal February 1994
Structural basis for potentiation by alcohols and anaesthetics in a ligand-gated ion channel journal April 2013
The Prokaryote Ligand-Gated Ion Channel ELIC Captured in a Pore Blocker-Bound Conformation by the Alzheimer’s Disease Drug Memantine journal October 2014
PHENIX: a comprehensive Python-based system for macromolecular structure solution journal January 2010
Inhaled Anesthetic Enhancement of Amyloid-β Oligomerization and Cytotoxicity journal January 2004
NMR structures of the human α7 nAChR transmembrane domain and associated anesthetic binding sites journal May 2014
Ligand Activation of the Prokaryotic Pentameric Ligand-Gated Ion Channel ELIC journal June 2011
The common inhalation anesthetic isoflurane induces caspase activation and increases amyloid β-protein level in vivo journal December 2008
Alpha4beta2 Neuronal Nicotinic Acetylcholine Receptors in the Central Nervous System Are Inhibited by Isoflurane and Propofol, but alpha7-type Nicotinic Acetylcholine Receptors Are Unaffected journal January 1997
Differential Sensitivities of Mammalian Neuronal and Muscle Nicotinic Acetylcholine Receptors to General Anesthetics journal January 1997
Anesthetic Sensitivity of the Gloeobacter violaceus Proton-Gated Ion Channel journal January 2010
Identification of Nicotinic Acetylcholine Receptor Amino Acids Photolabeled by the Volatile Anesthetic Halothane journal November 2003
VMD: Visual molecular dynamics journal February 1996
Caught in the Act: Multiple Binding Sites for Memantine journal October 2014
General Anesthetics Predicted to Block the GLIC Pore with Micromolar Affinity journal May 2012
Insights into Distinct Modulation of α7 and α7β2 Nicotinic Acetylcholine Receptors by the Volatile Anesthetic Isoflurane journal November 2013
Scalable molecular dynamics with NAMD journal January 2005
Conformational Changes Underlying Desensitization of the Pentameric Ligand-Gated Ion Channel ELIC journal June 2015
HCN1 Channels as Targets for Volatile Anesthetics journal September 2015
Structure of the Pentameric Ligand-Gated Ion Channel GLIC Bound with Anesthetic Ketamine journal September 2012
Ligand activation of the prokaryotic pentameric ligand-gated ion channel ELIC text January 2011
The in vitro and in vivo enantioselectivity of etomidate implicates the GABAA receptor in general anaesthesia journal July 2003
Pentameric ligand-gated ion channel ELIC is activated by GABA and modulated by benzodiazepines journal October 2012
Safety of surgical personnel: a global concern journal September 2008
Genetic manipulation of ion channels: A new approach to structure and mechanism journal March 1989
Multiple Propofol-binding Sites in a γ-Aminobutyric Acid Type A Receptor (GABA A R) Identified Using a Photoreactive Propofol Analog journal August 2014
Mutations that stabilize the open state of the Erwinia chrisanthemi ligand-gated ion channel fail to change the conformation of the pore domain in crystals journal April 2012
The pore dimensions of gramicidin A journal December 1993
Reversal of ion-charge selectivity renders the pentameric ligand-gated ion channel GLIC insensitive to anaesthetics journal December 2012
Asymmetric Ligand Binding Facilitates Conformational Transitions in Pentameric Ligand-Gated Ion Channels journal January 2013
Early Exposure to Common Anesthetic Agents Causes Widespread Neurodegeneration in the Developing Rat Brain and Persistent Learning Deficits journal February 2003
Time-Resolved Photolabeling of the Nicotinic Acetylcholine Receptor by [ 3 H]Azietomidate, an Open-State Inhibitor journal February 2009
X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel journal January 2011
An estimation of the global volume of surgery: a modelling strategy based on available data journal July 2008
Human Neuronal Nicotinic Acetylcholine Receptors Expressed in Xenopus Oocytes Predict Efficacy of Halogenated Compounds That Disobey the Meyer-Overton Rule journal January 1999
Volume changes on protein folding journal July 1994
Structure and Dynamics of the GABA Binding Pocket: A Narrowing Cleft that Constricts during Activation journal January 2001
Unnatural Amino Acid Mutagenesis of the GABAA Receptor Binding Site Residues Reveals a Novel Cation-  Interaction between GABA and  2Tyr97 journal January 2007
Identification of Binding Sites in the Nicotinic Acetylcholine Receptor for TDBzl-etomidate, a Photoreactive Positive Allosteric Effector journal June 2008
A simple method for displaying the hydropathic character of a protein journal May 1982
Features and development of Coot journal March 2010
Amphiphilic sites for general anesthetic action? Evidence from 129Xe-{1H} intermolecular nuclear Overhauser effects journal January 1997
X-Ray Structures of General Anaesthetics Bound to a Pentameric Ligand-Gated Ion Channel journal January 2012
Comparative Protein Structure Modeling Using MODELLER journal November 2007

Cited By (8)

Structural basis of neurosteroid anesthetic action on GABAA receptors journal September 2018
Allosteric binding site in a Cys-loop receptor ligand-binding domain unveiled in the crystal structure of ELIC in complex with chlorpromazine journal October 2016
Mutagenesis computer experiments in pentameric ligand-gated ion channels: the role of simulation tools with different resolution journal April 2019
Structural Basis for Xenon Inhibition in a Cationic Pentameric Ligand-Gated Ion Channel journal February 2016
Structure and Pharmacologic Modulation of Inhibitory Glycine Receptors journal July 2016
Structural Studies of GABAA Receptor Binding Sites: Which Experimental Structure Tells us What? journal June 2016
Recent progress on the molecular pharmacology of propofol journal January 2018
Structural Basis for a Bimodal Allosteric Mechanism of General Anesthetic Modulation in Pentameric Ligand-Gated Ion Channels journal April 2018