From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization

Li, Xiaofang; Bond, Philip L.; Van Nostrand, Joy D.; Zhou, Jizhong; Huang, Longbin

doi:10.1038/srep12978

Title: From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization

Journal Article · Thu Aug 13 00:00:00 EDT 2015 · Scientific Reports

DOI:https://doi.org/10.1038/srep12978· OSTI ID:1624789

Li, Xiaofang ^[1]; Bond, Philip L. ^[2]; Van Nostrand, Joy D. ^[3]; Zhou, Jizhong ^[4]; Huang, Longbin ^[1]

Univ. of Queensland, Brisbane, QLD (Australia). Sustainable Minerals Inst., Centre for Mined Land Rehabilitation
Univ. of Queensland, Brisbane, QLD (Australia). Advanced Water Management Centre
Univ. of Oklahoma, Norman, OK (United States). Dept. of Microbiology and Plant Biology and Inst. for Environmental Genomics
Univ. of Oklahoma, Norman, OK (United States). Dept. of Microbiology and Plant Biology and Inst. for Environmental Genomics; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Earth Sciences Division; Tsinghua Univ., Beijing (China). School of Environment, State Key Joint Lab. of Environment Simulation and Pollution Control

Engineering microbial diversity to enhance soil functions may improve the success of direct revegetation in sulphidic mine tailings. Therefore, it is essential to explore how remediation and initial plant establishment can alter microbial communities, and, which edaphic factors control these changes under field conditions. A long-term revegetation trial was established at a Pb-Zn-Cu tailings impoundment in northwest Queensland. The control and amended and/or revegetated treatments were sampled from the 3-year-old trial. In total, 24 samples were examined using pyrosequencing of 16S rRNA genes and various chemical properties. The results showed that the microbial diversity was positively controlled by soil soluble Si and negatively controlled by soluble S, total Fe and total As, implying that pyrite weathering posed a substantial stress on microbial development in the tailings. All treatments were dominated by typical extremophiles and lithotrophs, typically Truepera, Thiobacillus, Rubrobacter; significant increases in microbial diversity, biomass and frequency of organotrophic genera (typically Nocardioides and Altererythrobacter) were detected in the revegetated and amended treatment. We concluded that appropriate phytostabilization options have the potential to drive the microbial diversity and community structure in the tailings toward those of natural soils, however, inherent environmental stressors may limit such changes.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER); Isa Mines, Glencore Ltd

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1624789

Journal Information:: Scientific Reports, Vol. 5, Issue 1; ISSN 2045-2322

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

Citation Metrics:

Cited by: 43 works

Citation information provided by
Web of Science

References (91)

Changes through time: integrating microorganisms into the study of succession Fierer, Noah; Nemergut, Diana; Knight, Rob Research in Microbiology, Vol. 161, Issue 8 https://doi.org/10.1016/j.resmic.2010.06.002	journal	October 2010
The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations : The genome of Spang, Anja; Poehlein, Anja; Offre, Pierre Environmental Microbiology, Vol. 14, Issue 12 https://doi.org/10.1111/j.1462-2920.2012.02893.x	journal	October 2012
Complete genome sequence of Thioalkalivibrio “sulfidophilus” HL-EbGr7 Muyzer, Gerard; Sorokin, Dimitry Yu; Mavromatis, Konstantinos Standards in Genomic Sciences, Vol. 4, Issue 1 https://doi.org/10.4056/sigs.1483693	journal	February 2011
Sulfitobacter litoralis sp. nov., a marine bacterium isolated from the East Sea, Korea Park, J. R.; Bae, J. -W.; Nam, Y. -D. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 4 https://doi.org/10.1099/ijs.0.64267-0	journal	April 2007
Truepera radiovictrix gen. nov., sp. nov., a new radiation resistant species and the proposal of Trueperaceae fam. nov. Albuquerque, Luciana; SimÃµes, Catarina; Nobre, M. Fernanda FEMS Microbiology Letters, Vol. 247, Issue 2 https://doi.org/10.1016/j.femsle.2005.05.002	journal	June 2005
Complete genome sequence of Thioalkalivibrio sp. K90mix Muyzer, Gerard; Sorokin, Dimitry Y.; Mavromatis, Konstantinos Standards in Genomic Sciences, Vol. 5, Issue 3 https://doi.org/10.4056/sigs.2315092	journal	December 2011
Speciation of the most soluble phases in a sequential extraction procedure adapted for geochemical studies of copper sulfide mine waste Dold, Bernhard Journal of Geochemical Exploration, Vol. 80, Issue 1 https://doi.org/10.1016/S0375-6742(03)00182-1	journal	August 2003
Rubrobacter xylanophilus sp. nov., a New Thermophilic Species Isolated from a Thermally Polluted Effluent Carreto, L.; Moore, E.; Nobre, M. F. International Journal of Systematic Bacteriology, Vol. 46, Issue 2 https://doi.org/10.1099/00207713-46-2-460	journal	April 1996
Salt and oxidative stress: similar and specific responses and their relation to salt tolerance in Citrus Gueta-Dahan, Yardena; Yaniv, Zohara; Zilinskas, Barbara A. Planta, Vol. 203, Issue 4 https://doi.org/10.1007/s004250050215	journal	November 1997
Thiohalobacter thiocyanaticus gen. nov., sp. nov., a moderately halophilic, sulfur-oxidizing gammaproteobacterium from hypersaline lakes, that utilizes thiocyanate Sorokin, D. Yu.; Kovaleva, O. L.; Tourova, T. P. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 2 https://doi.org/10.1099/ijs.0.012880-0	journal	August 2009
Ecological amplitudes of plant species and the internal consistency of Ellenberg's indicator values for moisture Ter Braak, Cajo J. F.; Gremmen, Niek J. M. Vegetatio, Vol. 69, Issue 1-3 https://doi.org/10.1007/BF00038689	journal	April 1987
Establishing microbial diversity and functions in weathered and neutral Cu–Pb–Zn tailings with native soil addition Li, Xiaofang; You, Fang; Bond, Philip L. Geoderma, Vol. 247-248 https://doi.org/10.1016/j.geoderma.2015.02.010	journal	June 2015
Ecosystem properties and microbial community changes in primary succession on a glacier forefront Ohtonen, Rauni; Fritze, Hannu; Pennanen, Taina Oecologia, Vol. 119, Issue 2 https://doi.org/10.1007/s004420050782	journal	May 1999
Ecological Succession McIntosh, R. P.; Odum, E. P. Science, Vol. 166, Issue 3903 https://doi.org/10.1126/science.166.3903.403-a	journal	October 1969
Effects of Compost on Colonization of Roots of Plants Grown in Metalliferous Mine Tailings, as Examined by Fluorescence In Situ Hybridization Iverson, Sadie L.; Maier, Raina M. Applied and Environmental Microbiology, Vol. 75, Issue 3 https://doi.org/10.1128/AEM.01434-08	journal	December 2008
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil Tourna, M.; Stieglmeier, M.; Spang, A. Proceedings of the National Academy of Sciences, Vol. 108, Issue 20 https://doi.org/10.1073/pnas.1013488108	journal	April 2011
Deciphering a multistage history affecting U–Cu(–Fe) mineralization in the Singhbhum Shear Zone, eastern India, using pyrite textures and compositions in the Turamdih U–Cu(–Fe) deposit Pal, Dipak C.; Barton, Mark D.; Sarangi, A. K. Mineralium Deposita, Vol. 44, Issue 1 https://doi.org/10.1007/s00126-007-0165-z	journal	October 2007
Thioalkalivibrio thiocyanoxidans sp. nov. and Thioalkalivibrio paradoxus sp. nov., novel alkaliphilic, obligately autotrophic, sulfur-oxidizing bacteria capable of growth on thiocyanate, from soda lakes. Lysenko, Anatoly M.; Sorokin, Dimitry Yu; Mityushina, Lubov L. International Journal of Systematic and Evolutionary Microbiology, Vol. 52, Issue 2 https://doi.org/10.1099/00207713-52-2-657	journal	March 2002
Dynamics in leachate chemistry of Cu-Au tailings in response to biochar and woodchip amendments: a column leaching study Li, Xiaofang; You, Fang; Huang, Longbin Environmental Sciences Europe, Vol. 25, Issue 1 https://doi.org/10.1186/2190-4715-25-32	journal	November 2013
WebMGA: a customizable web server for fast metagenomic sequence analysis Wu, Sitao; Zhu, Zhengwei; Fu, Liming BMC Genomics, Vol. 12, Issue 1 https://doi.org/10.1186/1471-2164-12-444	journal	September 2011
Phytostabilization of Mine Tailings in Arid and Semiarid Environments—An Emerging Remediation Technology Mendez, Monica O.; Maier, Raina M. Environmental Health Perspectives, Vol. 116, Issue 3 https://doi.org/10.1289/ehp.10608	journal	March 2008
Phytostabilization Potential of Quailbush for Mine Tailings: Growth, Metal Accumulation, and Microbial Community Changes Mendez, Monica O.; Glenn, Edward P.; Maier, Raina M. Journal of Environmental Quality, Vol. 36, Issue 1 https://doi.org/10.2134/jeq2006.0197	journal	January 2007
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale Lauber, C. L.; Hamady, M.; Knight, R. Applied and Environmental Microbiology, Vol. 75, Issue 15 https://doi.org/10.1128/AEM.00335-09	journal	June 2009
Analysis of the structure of microbial community in soils with different degrees of salinization using T-RFLP and real-time PCR techniques Andronov, E. E.; Petrova, S. N.; Pinaev, A. G. Eurasian Soil Science, Vol. 45, Issue 2 https://doi.org/10.1134/S1064229312020044	journal	February 2012
Chemotaxonomic characterization of a radiotolerant bacterium, Arthrobacter radiotolerans : Description of Rubrobacter radiotolerans gen. nov., comb. nov. Suzuki, Ken-ichiro; Collins, Matthew D.; Iijima, Eriko FEMS Microbiology Letters, Vol. 52, Issue 1-2 https://doi.org/10.1111/j.1574-6968.1988.tb02568.x	journal	July 1988
Spatial and Temporal Analysis of the Microbial Community in the Tailings of a Pb-Zn Mine Generating Acidic Drainage Huang, Li-Nan; Zhou, Wen-Hua; Hallberg, Kevin B. Applied and Environmental Microbiology, Vol. 77, Issue 15 https://doi.org/10.1128/AEM.02458-10	journal	June 2011
Ferrous iron oxidation and rusticyanin in halotolerant, acidophilic ‘Thiobacillus prosperus’ Nicolle, James Le C.; Simmons, Susan; Bathe, Stephan Microbiology, Vol. 155, Issue 4 https://doi.org/10.1099/mic.0.023192-0	journal	April 2009
Bacterial diversity in response to direct revegetation in the Pb–Zn–Cu tailings under subtropical and semi-arid conditions Li, Xiaofang; Huang, Longbin; Bond, Philip L. Ecological Engineering, Vol. 68 https://doi.org/10.1016/j.ecoleng.2014.03.044	journal	July 2014
Phytoremediation of contaminated soils Cunningham, Scott D.; Berti, William R.; Huang, Jianwei W. Trends in Biotechnology, Vol. 13, Issue 9 https://doi.org/10.1016/S0167-7799(00)88987-8	journal	September 1995
Bacterial Community Changes during Plant Establishment at the San Pedro River Mine Tailings Site Rosario, Karyna; Iverson, Sadie L.; Henderson, David A. Journal of Environmental Quality, Vol. 36, Issue 5 https://doi.org/10.2134/jeq2006.0315	journal	September 2007
Microbial communities in a porphyry copper tailings impoundment and their impact on the geochemical dynamics of the mine waste Diaby, Nouhou; Dold, Bernhard; Pfeifer, Hans-Rudolf Environmental Microbiology, Vol. 9, Issue 2 https://doi.org/10.1111/j.1462-2920.2006.01138.x	journal	February 2007
Long-term environmental impact of tailings deposits Moreno, Luis; Neretnieks, Ivars Hydrometallurgy, Vol. 83, Issue 1-4 https://doi.org/10.1016/j.hydromet.2006.03.052	journal	September 2006
Pyrosequencing enumerates and contrasts soil microbial diversity Roesch, Luiz F. W.; Fulthorpe, Roberta R.; Riva, Alberto The ISME Journal, Vol. 1, Issue 4 https://doi.org/10.1038/ismej.2007.53	journal	July 2007
A Trait-Based test for Habitat Filtering: Convex hull Volume Cornwell, William K.; Schwilk, Dylan W.; Ackerly, David D. Ecology, Vol. 87, Issue 6 https://doi.org/10.1890/0012-9658(2006)87[1465:ATTFHF]2.0.CO;2	journal	June 2006
Is rhizosphere remediation sufficient for sustainable revegetation of mine tailings? Huang, Longbin; Baumgartl, Thomas; Mulligan, David Annals of Botany, Vol. 110, Issue 2 https://doi.org/10.1093/aob/mcs115	journal	May 2012
Mechanisms of Primary Succession Following Deglaciation at Glacier Bay, Alaska Chapin, F. Stuart; Walker, Lawrence R.; Fastie, Christopher L. Ecological Monographs, Vol. 64, Issue 2 https://doi.org/10.2307/2937039	journal	February 1994
Pyrite oxidation: a state-of-the-art assessment of the reaction mechanism Rimstidt, J. Donald; Vaughan, David J. Geochimica et Cosmochimica Acta, Vol. 67, Issue 5 https://doi.org/10.1016/S0016-7037(02)01165-1	journal	March 2003
Novosphingobium taihuense sp. nov., a novel aromatic-compound-degrading bacterium isolated from Taihu Lake, China Liu, Zhi-Pei; Wang, Bao-Jun; Liu, Ying-Hao International Journal of Systematic and Evolutionary Microbiology, Vol. 55, Issue 3 https://doi.org/10.1099/ijs.0.63468-0	journal	May 2005
Factors Affecting Nitrification in Soils Sahrawat, K. L. Communications in Soil Science and Plant Analysis, Vol. 39, Issue 9-10 https://doi.org/10.1080/00103620802004235	journal	May 2008
Fast, accurate error-correction of amplicon pyrosequences using Acacia Bragg, Lauren; Stone, Glenn; Imelfort, Michael Nature Methods, Vol. 9, Issue 5 https://doi.org/10.1038/nmeth.1990	journal	April 2012
Thiothrix caldifontis sp. nov. and Thiothrix lacustris sp. nov., gammaproteobacteria isolated from sulfide springs Chernousova, E.; Gridneva, E.; Grabovich, M. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 12 https://doi.org/10.1099/ijs.0.009456-0	journal	July 2009
Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils Brown, Shawn P.; Jumpponen, Ari Molecular Ecology, Vol. 23, Issue 2 https://doi.org/10.1111/mec.12487	journal	September 2013
Richness, diversity, and rate of primary succession over 20 year in tropical coastal dunes Álvarez-Molina, L. L.; Martínez, M. L.; Pérez-Maqueo, O. Plant Ecology, Vol. 213, Issue 10 https://doi.org/10.1007/s11258-012-0114-5	journal	August 2012
Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment Sohn, J. H. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 54, Issue 5 https://doi.org/10.1099/ijs.0.02945-0	journal	September 2004
Altererythrobacter xinjiangensis sp. nov., isolated from desert sand, and emended description of the genus Altererythrobacter Xue, X.; Zhang, K.; Cai, F. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue 1 https://doi.org/10.1099/ijs.0.025437-0	journal	February 2011
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes Fierer, N.; Leff, J. W.; Adams, B. J. Proceedings of the National Academy of Sciences, Vol. 109, Issue 52 https://doi.org/10.1073/pnas.1215210110	journal	December 2012
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes Pruesse, Elmar; Peplies, Jörg; Glöckner, Frank Oliver Bioinformatics, Vol. 28, Issue 14 https://doi.org/10.1093/bioinformatics/bts252	journal	May 2012
Impact of salinity on soil microbial communities and the decomposition of maize in acidic soils Wichern, Jannike; Wichern, Florian; Joergensen, Rainer Georg Geoderma, Vol. 137, Issue 1-2 https://doi.org/10.1016/j.geoderma.2006.08.001	journal	December 2006
Bacterial Diversity in Mine Tailings Compared by Cultivation and Cultivation-independent Methods and their Resistance to Lead and Cadmium Zhang, Han-Bo; Yang, Ming-Xia; Shi, Wen Microbial Ecology, Vol. 54, Issue 4 https://doi.org/10.1007/s00248-007-9229-y	journal	March 2007
Metals, Toxicity and Oxidative Stress Valko, M.; Morris, H.; Cronin, M. Current Medicinal Chemistry, Vol. 12, Issue 10 https://doi.org/10.2174/0929867053764635	journal	May 2005
Acidiferrobacter thiooxydans, gen. nov. sp. nov.; an acidophilic, thermo-tolerant, facultatively anaerobic iron- and sulfur-oxidizer of the family Ectothiorhodospiraceae Hallberg, Kevin B.; Hedrich, Sabrina; Johnson, D. Barrie Extremophiles, Vol. 15, Issue 2 https://doi.org/10.1007/s00792-011-0359-2	journal	February 2011
Controls on soil biodiversity: insights from extreme environments Wall, Diana H.; Virginia, Ross A. Applied Soil Ecology, Vol. 13, Issue 2 https://doi.org/10.1016/S0929-1393(99)00029-3	journal	October 1999
Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils Nacke, Heiko; Thürmer, Andrea; Wollherr, Antje PLoS ONE, Vol. 6, Issue 2 https://doi.org/10.1371/journal.pone.0017000	journal	February 2011
Sulfitobacter mediterraneus sp. nov., a new sulfite-oxidizing member of the α-Proteobacteria Pukall, Rudiger; Buntefuβ, Daniela; Frühling, Anja International Journal of Systematic and Evolutionary Microbiology, Vol. 49, Issue 2 https://doi.org/10.1099/00207713-49-2-513	journal	April 1999
Changes in microbial community characteristics and soil organic matter with nitrogen additions in two tropical forests Cusack, Daniela F.; Silver, Whendee L.; Torn, Margaret S. Ecology, Vol. 92, Issue 3 https://doi.org/10.1890/10-0459.1	journal	March 2011
Understanding the salinity issue of coal mine spoils in the context of salt cycle Li, Xiaofang; Park, Jin Hee; Edraki, Mansour Environmental Geochemistry and Health, Vol. 36, Issue 3 https://doi.org/10.1007/s10653-013-9573-4	journal	October 2013
Survival in Nuclear Waste, Extreme Resistance, and Potential Applications Gleaned from the Genome Sequence of Kineococcus radiotolerans SRS30216 Bagwell, Christopher E.; Bhat, Swapna; Hawkins, Gary M. PLoS ONE, Vol. 3, Issue 12 https://doi.org/10.1371/journal.pone.0003878	journal	December 2008
Response of labile soil organic matter to changes in forest vegetation in subtropical regions Wang, Qingkui; Wang, Silong Applied Soil Ecology, Vol. 47, Issue 3 https://doi.org/10.1016/j.apsoil.2010.12.004	journal	March 2011
Toward a New Paradigm for Tailings Phytostabilization—Nature of the Substrates, Amendment Options, and Anthropogenic Pedogenesis Li, Xiaofang; Huang, Longbin Critical Reviews in Environmental Science and Technology, Vol. 45, Issue 8 https://doi.org/10.1080/10643389.2014.921977	journal	December 2014
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods Tamura, K.; Peterson, D.; Peterson, N. Molecular Biology and Evolution, Vol. 28, Issue 10 https://doi.org/10.1093/molbev/msr121	journal	May 2011
The Genome Sequence of the Obligately Chemolithoautotrophic, Facultatively Anaerobic Bacterium Thiobacillus denitrificans Beller, H. R.; Chain, P. S. G.; Letain, T. E. Journal of Bacteriology, Vol. 188, Issue 4 https://doi.org/10.1128/JB.188.4.1473-1488.2006	journal	February 2006
Factors influencing the composition of bacterial communities found at abandoned copper-tailings dumps Iglesia, R.; Castro, D.; Ginocchio, R. Journal of Applied Microbiology, Vol. 100, Issue 3 https://doi.org/10.1111/j.1365-2672.2005.02793.x	journal	March 2006
Element cycling and secondary mineralogy in porphyry copper tailings as a function of climate, primary mineralogy, and mineral processing Dold, Bernhard; Fontboté, Lluis Journal of Geochemical Exploration, Vol. 74, Issue 1-3 https://doi.org/10.1016/S0375-6742(01)00174-1	journal	December 2001
Germination, Growth, and Nodulation of Sesbania rostrata Grown in Pb/Zn Mine Tailings Yang, Z. Y.; Yuan, J. G.; Xin, G. R. Environmental Management, Vol. 21, Issue 4 https://doi.org/10.1007/s002679900054	journal	July 1997
Plant succession and rhizosphere microbial communities in a recently deglaciated alpine terrain Tscherko, Dagmar; Hammesfahr, Ute; Zeltner, Georg Basic and Applied Ecology, Vol. 6, Issue 4 https://doi.org/10.1016/j.baae.2005.02.004	journal	August 2005
Complete genome sequence of Truepera radiovictrix type strain (RQ-24T) Ivanova, Natalia; Rohde, Christine; Munk, Christine Standards in Genomic Sciences, Vol. 4, Issue 1 https://doi.org/10.4056/sigs.1563919	journal	February 2011
VEGAN, a package of R functions for community ecology Dixon, Philip Journal of Vegetation Science, Vol. 14, Issue 6 https://doi.org/10.1111/j.1654-1103.2003.tb02228.x	journal	April 2003
Rubrobacter taiwanensis sp. nov., a novel thermophilic, radiation-resistant species isolated from hot springs Chen, Mao-Yen; Wu, Shih-Hsiung; Lin, Guang-Huey International Journal of Systematic and Evolutionary Microbiology, Vol. 54, Issue 5 https://doi.org/10.1099/ijs.0.63109-0	journal	September 2004
Structure and function of the soil microbial community in a long-term fertilizer experiment Marschner, P. Soil Biology and Biochemistry, Vol. 35, Issue 3 https://doi.org/10.1016/S0038-0717(02)00297-3	journal	March 2003
Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada Brockett, Beth F. T.; Prescott, Cindy E.; Grayston, Sue J. Soil Biology and Biochemistry, Vol. 44, Issue 1 https://doi.org/10.1016/j.soilbio.2011.09.003	journal	January 2012
The changes of soil nitrogen and carbon contents in a long-term field experiment under different systems of nitrogen fertilization [The changes of soil nitrogen and carbon contents in a long-term field experiment under different systems of nitrogen fertilization] Nedvěd, V.; Balík, J.; Černý, J. Plant, Soil and Environment, Vol. 54, Issue No. 11 https://doi.org/10.17221/435-PSE	journal	December 2008
Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes Will, C.; Thurmer, A.; Wollherr, A. Applied and Environmental Microbiology, Vol. 76, Issue 20 https://doi.org/10.1128/AEM.01063-10	journal	August 2010
Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1 White, O. Science, Vol. 286, Issue 5444 https://doi.org/10.1126/science.286.5444.1571	journal	November 1999
Drought induces oxidative stress in pea plants Moran, JoseF.; Becana, Manuel; Iturbe-Ormaetxe, I�aki Planta, Vol. 194, Issue 3 https://doi.org/10.1007/BF00197534	journal	August 1994
The Strategy of Ecosystem Development Odum, E. P. Science, Vol. 164, Issue 3877 https://doi.org/10.1126/science.164.3877.262	journal	April 1969
Alkalilimnicola ehrlichii sp. nov., a novel, arsenite-oxidizing haloalkaliphilic gammaproteobacterium capable of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor Hoeft, S. E.; Blum, J. S.; Stolz, J. F. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 3 https://doi.org/10.1099/ijs.0.64576-0	journal	March 2007
Microbial community structure and its functional implications Fuhrman, Jed A. Nature, Vol. 459, Issue 7244 https://doi.org/10.1038/nature08058	journal	May 2009
Toward an Ecological Classification of soil Bacteria Fierer, Noah; Bradford, Mark A.; Jackson, Robert B. Ecology, Vol. 88, Issue 6 https://doi.org/10.1890/05-1839	journal	June 2007
VEGAN, a package of R functions for community ecology Dixon, Philip Journal of Vegetation Science, Vol. 14, Issue 6 https://doi.org/10.1658/1100-9233(2003)014[0927:vaporf]2.0.co;2	journal	January 2003
Ecological Succession Encyclopedia of Entomology https://doi.org/10.1007/0-306-48380-7_1337	book	January 2004
Ecological amplitudes of plant species and the internal consistency of Ellenberg’s indicator values for moisture Ter Braak, Cajo J. F.; Gremmen, Niek J. M. Theory and models in vegetation science https://doi.org/10.1007/978-94-009-4061-1_8	book	January 1987
Evaporation Retardation by Monolayers Mansfield, W. W.; Mysels, K. J.; Wu, J. Science, Vol. 176, Issue 4037 https://doi.org/10.1126/science.176.4037.944	journal	May 1972
Toward a New Paradigm for Tailings Phytostabilization – Nature of the Substrates, Amendment Options and Anthropogenic Pedogenesis Li, Xiaofang; Huang, Longbin Taylor & Francis https://doi.org/10.6084/m9.figshare.1032755.v2	dataset	January 2014
Evaporation Retardation by Monolayers Kappesser, R.; Greif, R.; Cornet, I. Science, Vol. 166, Issue 3903 https://doi.org/10.1126/science.166.3903.403	journal	October 1969
Soil microbial activity and biomass in the primary succession of a dry heath forest Aikio, Sami; Väre, Henry; Strömmer, Rauni Soil Biology and Biochemistry, Vol. 32, Issue 8-9 https://doi.org/10.1016/s0038-0717(00)00019-5	journal	August 2000
On the microwave digestion of soils and sediments for determination of lanthanides and some toxic and essential elements by inductively coupled plasma source mass spectrometry Ivanova, J. Talanta, Vol. 54, Issue 4 https://doi.org/10.1016/s0039-9140(00)00640-8	journal	May 2001
Biodegradability of soil water soluble organic carbon extracted from seven different soils Scaglia, Barbara; Adani, Fabrizio Journal of Environmental Sciences, Vol. 21, Issue 5 https://doi.org/10.1016/s1001-0742(08)62319-0	journal	January 2009
Do bacterial and fungal communities assemble differently during primary succession? Schmidt, S. K.; Nemergut, D. R.; Darcy, J. L. Molecular Ecology, Vol. 23, Issue 2 https://doi.org/10.1111/mec.12589	journal	January 2014
High-Throughput Amplicon Sequencing Reveals Distinct Communities within a Corroding Concrete Sewer System Cayford, Barry I.; Dennis, Paul G.; Keller, Jurg Applied and Environmental Microbiology, Vol. 78, Issue 19 https://doi.org/10.1128/aem.01582-12	journal	July 2012
Analysis of Early Bacterial Communities on Volcanic Deposits on the Island of Miyake (Miyake-jima), Japan: a 6-year Study at a Fixed Site Fujimura, Reiko; Sato, Yoshinori; Nishizawa, Tomoyasu Microbes and Environments, Vol. 27, Issue 1 https://doi.org/10.1264/jsme2.me11207	journal	January 2012
Toward a New Paradigm for Tailings Phytostabilization – Nature of the Substrates, Amendment Options and Anthropogenic Pedogenesis Li, Xiaofang; Huang, Longbin Taylor & Francis https://doi.org/10.6084/m9.figshare.1032755.v1	dataset	January 2014

Cited By (12)

Analysis of microbial communities in heavy metals-contaminated soils using the metagenomic approach Hemmat-Jou, M. H.; Safari-Sinegani, A. A.; Mirzaie-Asl, A. Ecotoxicology, Vol. 27, Issue 9 https://doi.org/10.1007/s10646-018-1981-x	journal	September 2018
Characterization of hard- and softwood biochars pyrolyzed at high temperature Jiang, Shasha; Nguyen, Tuan A. H.; Rudolph, Victor Environmental Geochemistry and Health, Vol. 39, Issue 2 https://doi.org/10.1007/s10653-016-9873-6	journal	September 2016
One giant leap for mankind: can ecopoiesis avert mine tailings disasters? Cross, Adam T.; Stevens, Jason C.; Dixon, Kingsley W. Plant and Soil, Vol. 421, Issue 1-2 https://doi.org/10.1007/s11104-017-3410-y	journal	September 2017
Denitrifying Microbial Communities in Heavy-Metal-Contaminated Paddy Soils near Electronic-Waste Processing Centers Deng, Dongmei; Hu, Min; Li, Linglu Water, Air, & Soil Pollution, Vol. 229, Issue 10 https://doi.org/10.1007/s11270-018-3974-z	journal	September 2018
Field comparison of the effectiveness of agricultural and nonagricultural organic wastes for aided phytostabilization of a Pb-Zn mine tailings pond in Hunan Province, China Li, Zhao-Yang; Yang, Sheng-Xiang; Peng, Xi-Zhu International Journal of Phytoremediation, Vol. 20, Issue 12 https://doi.org/10.1080/15226514.2018.1474434	journal	October 2018
Effects of Amendments on Soil Microbial Diversity, Enzyme Activity and Nutrient Accumulation after Assisted Phytostabilization of an Extremely Acidic Metalliferous Mine Soil Yang, Sheng-xiang; Liao, Bin; Xiao, Rong-bo Applied Sciences, Vol. 9, Issue 8 https://doi.org/10.3390/app9081552	journal	April 2019
Variation of the Bacterial Community in the Rhizoplane Iron Plaque of the Wetland Plant Typha latifolia Chi, Haochun; Yang, Lu; Yang, Wenjing International Journal of Environmental Research and Public Health, Vol. 15, Issue 12 https://doi.org/10.3390/ijerph15122610	journal	November 2018
Field comparison of the effectiveness of agricultural and nonagricultural organic wastes for aided phytostabilization of a Pb-Zn mine tailings pond in Hunan Province, China Li, Zhao-Yang; Yang, Sheng-Xiang; Peng, Xi-Zhu Taylor & Francis https://doi.org/10.6084/m9.figshare.7542971	text	January 2019
Field comparison of the effectiveness of agricultural and nonagricultural organic wastes for aided phytostabilization of a Pb-Zn mine tailings pond in Hunan Province, China Li, Zhao-Yang; Yang, Sheng-Xiang; Peng, Xi-Zhu Taylor & Francis https://doi.org/10.6084/m9.figshare.7542971.v1	text	January 2019
Microbial Functional Capacity Is Preserved Within Engineered Soil Formulations Used In Mine Site Restoration Kumaresan, Deepak; Cross, Adam T.; Moreira-Grez, Benjamin Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-00650-6	journal	April 2017
Effect of Re-acidification on Buffalo Grass Rhizosphere and Bulk Microbial Communities During Phytostabilization of Metalliferous Mine Tailings Honeker, Linnea K.; Gullo, Catherine F.; Neilson, Julia W. Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01209	journal	May 2019
Soil Microbiome Dynamics During Pyritic Mine Tailing Phytostabilization: Understanding Microbial Bioindicators of Soil Acidification Hottenstein, John D.; Neilson, Julie W.; Gil-Loaiza, Juliana Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01211	journal	June 2019

Similar Records

Transcriptomic profiles of Clostridium ljungdahlii during lithotrophic growth with syngas or H₂ and CO₂ compared to organotrophic growth with fructose

Journal Article · Fri Oct 13 00:00:00 EDT 2017 · Scientific Reports · OSTI ID:1624789

Aklujkar, Muktak; Leang, Ching; Shrestha, Pravin M.; +2 more

Plant Growth-Promoting Bacteria for Phytostabilization of Mine Tailings

Journal Article · Tue May 19 00:00:00 EDT 2009 · Environ. Sci. Tech. 42:2079,2008 · OSTI ID:1624789

Grandlic, C J; Mendez, M O; Chorover, J; +2 more

Functional activity and functional gene diversity of a Cu-contaminated soil remediated by aided phytostabilization using compost, dolomitic limestone and a mixed tree stand

Journal Article · Thu Nov 01 00:00:00 EDT 2018 · Environmental Pollution · OSTI ID:1624789

Xue, Kai; Zhou, Jizhong; Van Nostrand, Joy; +4 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
science & technology - other topics
geochemistry
microbial ecology

Title: From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization

Citation Formats

References (91)

Cited By (12)

Similar Records

Related Subjects