Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

The active site structure and catalytic mechanism of arsenite oxidase

Journal Article · · Scientific Reports
 [1];  [2];  [3];  [4];  [5]
  1. Univ. College London (United Kingdom). Division of Biosciences. Inst. of Structural and Molecular Biology; DOE/OSTI
  2. Univ. of Saskatchewan, Saskatoon, SK (Canada). Dept. of Anatomy and Cell Biology; Univ. of Saskatchewan, Saskatoon, SK (Canada). Dept. of Geological Sciences. Molecular and Environmental Sciences Research Group
  3. Univ. of Saskatchewan, Saskatoon, SK (Canada). Dept. of Geological Sciences. Molecular and Environmental Sciences Research Group
  4. Univ. College London (United Kingdom). Division of Biosciences. Inst. of Structural and Molecular Biology
  5. Univ. of Saskatchewan, Saskatoon, SK (Canada). Dept. of Geological Sciences. Molecular and Environmental Sciences Research Group; Univ. of Saskatchewan, Saskatoon, SK (Canada). Dept. of Chemistry
Arsenite oxidase is thought to be an ancient enzyme, originating before the divergence of the Archaea and the Bacteria. We have investigated the nature of the molybdenum active site of the arsenite oxidase from the Alphaproteobacterium Rhizobium sp. str. NT-26 using a combination of X-ray absorption spectroscopy and computational chemistry. Our analysis indicates an oxidized Mo(VI) active site with a structure that is far from equilibrium. We propose that this is an entatic state imposed by the protein on the active site through relative orientation of the two molybdopterin cofactors, in a variant of the Rây-Dutt twist of classical coordination chemistry, which we call the pterin twist hypothesis. We discuss the implications of this hypothesis for other putatively ancient molybdopterin-based enzymes.
Research Organization:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-76SF00515
OSTI ID:
1624289
Journal Information:
Scientific Reports, Journal Name: Scientific Reports Journal Issue: 1 Vol. 7; ISSN 2045-2322
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English

References (52)

Metalloprotein active site structure determination: Synergy between X-ray absorption spectroscopy and X-ray crystallography journal October 2012
Sulfur K-edge Spectroscopic Investigation of Second Coordination Sphere Effects in Oxomolybdenum-Thiolates:  Relationship to Molybdenum−Cysteine Covalency and Electron Transfer in Sulfite Oxidase journal February 2007
X-ray Absorption Spectroscopy of a Quantitatively Mo(V) Dimethyl Sulfoxide Reductase Species journal February 2013
COSMO: a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient journal January 1993
An all‐electron numerical method for solving the local density functional for polyatomic molecules journal January 1990
Ab initio curved-wave x-ray-absorption fine structure journal September 1991
A Nonhyperthermophilic Common Ancestor to Extant Life Forms journal January 1999
Hyperthermophiles in the History of Life book January 2007
Introduction to Enzyme and Coenzyme Chemistry book January 2012
Introduction to Enzyme and Coenzyme Chemistry book January 2004
Structure Correlation book February 1994
Crystallographic Databases: Search and Retrieval of Information from the Cambridge Structural Database book February 1994
Formaldehyde ferredoxin oxidoreductase from Pyrococcus furiosus: the 1.85 Å resolution crystal structure and its mechanistic implications 1 1Edited by I. A. Wilson journal February 1999
Hydrothermal Focusing of Chemical and Chemiosmotic Energy, Supported by Delivery of Catalytic Fe, Ni, Mo/W, Co, S and Se, Forced Life to Emerge journal November 2009
Nitrogenase and homologs journal December 2014
A 13-element Ge detector for fluorescence EXAFS
  • Cramer, S. P.; Tench, O.; Yocum, M.
  • Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 266, Issue 1-3 https://doi.org/10.1016/0168-9002(88)90449-4
journal April 1988
Crystal Structure of the 100 kDa Arsenite Oxidase from Alcaligenes faecalis in Two Crystal Forms at 1.64 Å and 2.03 Å journal February 2001
The bioinorganic chemistry of tungsten journal February 2009
Structural aspects of mononuclear Mo/W-enzymes journal May 2011
Recent advances in understanding blue copper proteins journal April 2011
Spectroscopic studies of molybdenum and tungsten enzymes journal May 2011
Electrochemical Studies of Arsenite Oxidase:  An Unusual Example of a Highly Cooperative Two-Electron Molybdenum Center journal February 2004
Structure of the Molybdenum Site of Rhodobacter sphaeroides Biotin Sulfoxide Reductase journal April 2000
The Mononuclear Molybdenum Enzymes journal January 2014
Interaction of Product Analogues with the Active Site of Rhodobacter Sphaeroides Dimethyl Sulfoxide Reductase journal April 2007
In Search of the Bailar and Rây−Dutt Twist Mechanisms That Racemize Chiral Trischelates:  A Computational Study of Sc III , Ti IV , Co III , Zn II , Ga III , and Ge IV Complexes of a Ligand Analogue of Acetylacetonate journal September 2007
Structure of the Molybdenum Site of Escherichia coli Trimethylamine N -Oxide Reductase journal February 2008
Theoretical x-ray absorption fine structure standards journal July 1991
Aldehyde ferredoxin oxidoreductase from the hyperthermophilic archaebacterium Pyrococcus furiosus contains a tungsten oxo-thiolate center journal April 1992
The Active Site of Arsenite Oxidase from Alcaligenes f aecalis journal September 2002
The Molybdenum Site of Sulfite Oxidase:  A Comparison of Wild-Type and the Cysteine 207 to Serine Mutant Using X-ray Absorption Spectroscopy journal January 1996
Interaction of Arsenate with the Molybdenum Site of Sulfite Oxidase journal May 1998
Structure of the Molybdenum Site of Dimethyl Sulfoxide Reductase journal February 1999
Structural basis of enzymatic benzene ring reduction journal June 2015
Taking a snapshot of the triplet excited state of an OLED organometallic luminophore using X-rays journal May 2020
Molybdenum and tungsten oxygen transferases – structural and functional diversity within a common active site motif journal January 2014
COSMO: a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient journal January 1993
Molybdenum and tungsten oxygen transferases – structural and functional diversity within a common active site motif journal January 2014
Structure Correlation journal January 1994
From molecules to solids with the DMol3 approach journal November 2000
Structure of the non-redox-active tungsten/[4Fe:4S] enzyme acetylene hydratase journal February 2007
Arsenite Oxidase, an Ancient Bioenergetic Enzyme journal April 2003
Hyperthermophiles in the history of life journal September 2006
Ab initio curved-wave x-ray-absorption fine structure journal September 1991
Generalized Gradient Approximation Made Simple journal October 1996
Generalized Gradient Approximation Made Simple [Phys. Rev. Lett. 77, 3865 (1996)] journal February 1997
XAS-Collect : a computer program for X-ray absorption spectroscopic data acquisition journal July 2000
X-ray-induced photo-chemistry and X-ray absorption spectroscopy of biological samples journal October 2012
Structure of a hyperthermophilic tungstopterin enzyme, aldehyde ferredoxin oxidoreductase journal March 1995
Arsenite Oxidase Also Functions as an Antimonite Oxidase journal January 2015
The Respiratory Arsenite Oxidase: Structure and the Role of Residues Surrounding the Rieske Cluster journal August 2013
The universal tree of life: an update journal July 2015

Cited By (3)

Catalytic properties of the metal ion variants of mandelate racemase reveal alterations in the apparent electrophilicity of the metal cofactor journal January 2019
Structural and mechanistic analysis of the arsenate respiratory reductase provides insight into environmental arsenic transformations journal August 2018
Phylogenomic analysis reveals the basis of adaptation of Pseudorhizobium species to extreme environments posted_content July 2019

Similar Records

Molybdopterin in carbon monoxide oxidase from carboxydotrophic bacteria
Journal Article · Tue Jan 31 23:00:00 EST 1984 · J. Bacteriol.; (United States) · OSTI ID:6265237

X-ray Crystal Structure of Arsenite-Inhibited Xanthine Oxidase:[mu]-Sulfido,[mu]-Oxo Double Bridge between Molybdenum and Arsenic in the Active Site
Journal Article · Tue Oct 23 00:00:00 EDT 2012 · J. Am. Chem. Soc. · OSTI ID:1050076

sup 31 P ENDOR studies of xanthine oxidase: Coupling of phosphorus of the pterin cofactor to molybdenum(V)
Journal Article · Tue Apr 23 00:00:00 EDT 1991 · Biochemistry; (United States) · OSTI ID:5594973