Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics

Gao, Cheng; Montoya, Liliam; Xu, Ling; Madera, Mary; Hollingsworth, Joy; Purdom, Elizabeth; Singan, Vasanth; Vogel, John; Hutmacher, Robert B.; Dahlberg, Jeffery A.; Coleman-Derr, Devin; Lemaux, Peggy G.; Taylor, John W.

doi:10.1038/s41467-019-13913-9

Title: Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics

Journal Article · Tue Jan 07 00:00:00 EST 2020 · Nature Communications

DOI:https://doi.org/10.1038/s41467-019-13913-9· OSTI ID:1624233

^[1];

^[2]; Madera, Mary ^[1]; Hollingsworth, Joy ^[3];

^[1];

^[4]; Vogel, John ^[4]; Hutmacher, Robert B. ^[5]; Dahlberg, Jeffery A. ^[3]; Coleman-Derr, Devin ^[2];

^[1];

^[1]

Univ. of California, Berkeley, CA (United States)
Univ. of California, Berkeley, CA (United States); US Dept. of Agriculture (USDA), Albany, CA (United States). Agricultural Research Service
Univ. of California Kearney Agricultural Research & Extension Center, Parlier, CA (United States)
USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)
Univ. of California West Side Research & Extension Center, Five Points, CA (United States)

Community assembly of crop-associated fungi is thought to be strongly influenced by deterministic selection exerted by the plant host, rather than stochastic processes. Here we use a simple, sorghum system with abundant sampling to show that stochastic forces (drift or stochastic dispersal) act on fungal community assembly in leaves and roots early in host development and when sorghum is drought stressed, conditions when mycobiomes are small. Unexpectedly, we find no signal for stochasticity when drought stress is relieved, likely due to renewed selection by the host. In our experimental system, the host compartment exerts the strongest effects on mycobiome assembly, followed by the timing of plant development and lastly by plant genotype. Using a dissimilarity-overlap approach, we find a universality in the forces of community assembly of the mycobiomes of the different sorghum compartments and in functional guilds of fungi.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Univ. of California, Oakland, CA (United States); USDOE Joint Genome Institute (JGI), Berkeley, CA (United States); Pacific Northwest National Laboratory (PNNL), Richland, WA (United States); Univ. of California, Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: SC0014081; AC02-05CH11231

OSTI ID:: 1624233

Alternate ID(s):: OSTI ID: 1660762; OSTI ID: 1783199

Journal Information:: Nature Communications, Vol. 11, Issue 1; ISSN 2041-1723

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

Citation Metrics:

Cited by: 98 works

Citation information provided by
Web of Science

References (96)

Changes through time: integrating microorganisms into the study of succession Fierer, Noah; Nemergut, Diana; Knight, Rob Research in Microbiology, Vol. 161, Issue 8 https://doi.org/10.1016/j.resmic.2010.06.002	journal	October 2010
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild Nguyen, Nhu H.; Song, Zewei; Bates, Scott T. Fungal Ecology, Vol. 20 https://doi.org/10.1016/j.funeco.2015.06.006	journal	April 2016
Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism Davison, J.; Moora, M.; Opik, M. Science, Vol. 349, Issue 6251 https://doi.org/10.1126/science.aab1161	journal	August 2015
Pathogens and insect herbivores drive rainforest plant diversity and composition Bagchi, Robert; Gallery, Rachel E.; Gripenberg, Sofia Nature, Vol. 506, Issue 7486 https://doi.org/10.1038/nature12911	journal	January 2014
Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances Adams, Rachel I.; Miletto, Marzia; Taylor, John W. The ISME Journal, Vol. 7, Issue 7 https://doi.org/10.1038/ismej.2013.28	journal	February 2013
Estimating and mapping ecological processes influencing microbial community assembly Stegen, James C.; Lin, Xueju; Fredrickson, Jim K. Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.00370	journal	May 2015
Spatiotemporal Variation and Networks in the Mycobiome of the Wheat Canopy Sapkota, Rumakanta; Jørgensen, Lise N.; Nicolaisen, Mogens Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.01357	journal	August 2017
Disproportionate abundance between ectomycorrhizal root tips and their associated mycelia: Ectomycorrhizal root tips and their associated mycelia KjÃ¸ller, Rasmus FEMS Microbiology Ecology, Vol. 58, Issue 2 https://doi.org/10.1111/j.1574-6941.2006.00166.x	journal	November 2006
PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing? Anderson, Marti J.; Walsh, Daniel C. I. Ecological Monographs, Vol. 83, Issue 4 https://doi.org/10.1890/12-2010.1	journal	November 2013
Predicting ecosystem stability from community composition and biodiversity De Mazancourt, Claire; Isbell, Forest; Larocque, Allen Wiley-Blackwell https://doi.org/10.5167/uzh-78222	text	January 2013
Universality of human microbial dynamics Bashan, Amir; Gibson, Travis E.; Friedman, Jonathan Nature, Vol. 534, Issue 7606 https://doi.org/10.1038/nature18301	journal	June 2016
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses Varoquaux, Nelle; Cole, Benjamin; Gao, Cheng Proceedings of the National Academy of Sciences, Vol. 116, Issue 52 https://doi.org/10.1073/pnas.1907500116	journal	December 2019
UPARSE: highly accurate OTU sequences from microbial amplicon reads Edgar, Robert C. Nature Methods, Vol. 10, Issue 10 https://doi.org/10.1038/nmeth.2604	journal	August 2013
High-level classification of the Fungi and a tool for evolutionary ecological analyses Tedersoo, Leho; Sánchez-Ramírez, Santiago; Kõljalg, Urmas Fungal Diversity, Vol. 90, Issue 1 https://doi.org/10.1007/s13225-018-0401-0	journal	May 2018
Environmental Metabarcoding Reveals Contrasting Belowground and Aboveground Fungal Communities from Poplar at a Hg Phytomanagement Site Durand, Alexis; Maillard, François; Foulon, Julie Microbial Ecology, Vol. 74, Issue 4 https://doi.org/10.1007/s00248-017-0984-0	journal	April 2017
Succession of endophytic fungi and arbuscular mycorrhizal fungi associated with the growth of plant and their correlation with secondary metabolites in the roots of plants Dang, Hanli; Zhang, Tao; Wang, Zhongke BMC Plant Biology, Vol. 21, Issue 1 https://doi.org/10.1186/s12870-021-02942-6	journal	April 2021
ggplot2 Wickham, Hadley Use R! https://doi.org/10.1007/978-3-319-24277-4	book	January 2016
Predicting ecosystem stability from community composition and biodiversity de Mazancourt, Claire; Isbell, Forest; Larocque, Allen Ecology Letters, Vol. 16, Issue 5 https://doi.org/10.1111/ele.12088	journal	February 2013
Stochastic Community Assembly: Does It Matter in Microbial Ecology? Zhou, Jizhong; Ning, Daliang Microbiology and Molecular Biology Reviews, Vol. 81, Issue 4 https://doi.org/10.1128/MMBR.00002-17	journal	October 2017
Increased precipitation, rather than warming, exerts a strong influence on arbuscular mycorrhizal fungal community in a semiarid steppe ecosystem Gao, Cheng; Kim, Yong-Chan; Zheng, Yong Botany, Vol. 94, Issue 6 https://doi.org/10.1139/cjb-2015-0210	journal	June 2016
Mycorrhizal fungi show regular community compositions in natural ecosystems Verbruggen, Erik; Sheldrake, Merlin; Bainard, Luke D. The ISME Journal, Vol. 12, Issue 2 https://doi.org/10.1038/ismej.2017.169	journal	October 2017
Global patterns of drought recovery Schwalm, Christopher R.; Anderegg, William R. L.; Michalak, Anna M. Nature, Vol. 548, Issue 7666 https://doi.org/10.1038/nature23021	journal	August 2017
Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorpha Liebal, Ulf Winfried; Fabry, Brigida A.; Ravikrishnan, Aarthi RWTH Aachen University https://doi.org/10.18154/rwth-2021-02761	text	January 2021
Stochastic and deterministic assembly processes in subsurface microbial communities Stegen, James C.; Lin, Xueju; Konopka, Allan E. The ISME Journal, Vol. 6, Issue 9 https://doi.org/10.1038/ismej.2012.22	journal	March 2012
zCompositions — R package for multivariate imputation of left-censored data under a compositional approach Palarea-Albaladejo, Javier; Martín-Fernández, Josep Antoni Chemometrics and Intelligent Laboratory Systems, Vol. 143 https://doi.org/10.1016/j.chemolab.2015.02.019	journal	April 2015
Arbuscular Mycorrhizal Fungi Increase Organic Carbon Decomposition Under Elevated CO2 Cheng, L.; Booker, F. L.; Tu, C. Science, Vol. 337, Issue 6098 https://doi.org/10.1126/science.1224304	journal	August 2012
Short-Term Evaluation of the Spatial Distribution of Trophic Groups of Amoebae in the Rhizosphere of Zea mays Inoculated with Rhizophagus intraradices Cortés-Pérez, Sandra; Ferrera-Cerrato, Ronald; Rodríguez-Zaragoza, Salvador Microbial Ecology https://doi.org/10.1007/s00248-022-02132-3	journal	November 2022
Strong succession in arbuscular mycorrhizal fungal communities Gao, Cheng; Montoya, Liliam; Xu, Ling The ISME Journal, Vol. 13, Issue 1 https://doi.org/10.1038/s41396-018-0264-0	journal	August 2018
Partitioning the turnover and nestedness components of beta diversity: Partitioning beta diversity Baselga, Andrés Global Ecology and Biogeography, Vol. 19, Issue 1 https://doi.org/10.1111/j.1466-8238.2009.00490.x	journal	October 2009
Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes Zhang, Ximei; Johnston, Eric R.; Liu, Wei Global Change Biology, Vol. 22, Issue 1 https://doi.org/10.1111/gcb.13080	journal	November 2015
Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China Yang, Teng; Tedersoo, Leho; Soltis, Pamela S. The ISME Journal, Vol. 13, Issue 3 https://doi.org/10.1038/s41396-018-0303-x	journal	October 2018
Community assembly and coexistence in communities of arbuscular mycorrhizal fungi Vályi, Kriszta; Mardhiah, Ulfah; Rillig, Matthias C. Freie Universität Berlin https://doi.org/10.17169/refubium-25392	text	January 2016
Conceptual Synthesis in Community Ecology Vellend, Mark The Quarterly Review of Biology, Vol. 85, Issue 2 https://doi.org/10.1086/652373	journal	June 2010
Assessing the relative importance of neutral stochasticity in ecological communities Vellend, Mark; Srivastava, Diane S.; Anderson, Kathryn M. Oikos, Vol. 123, Issue 12 https://doi.org/10.1111/oik.01493	journal	September 2014
Dissimilarity‐overlap analysis of community dynamics: Opportunities and pitfalls Kalyuzhny, Michael; Shnerb, Nadav M. Methods in Ecology and Evolution, Vol. 8, Issue 12 https://doi.org/10.1111/2041-210X.12809	journal	June 2017
Local community size mediates ecological drift and competition in metacommunities Orrock, John L.; Watling, James I. Proceedings of the Royal Society B: Biological Sciences, Vol. 277, Issue 1691 https://doi.org/10.1098/rspb.2009.2344	journal	March 2010
Rethinking Community Assembly through the Lens of Coexistence Theory HilleRisLambers, J.; Adler, P. B.; Harpole, W. S. Annual Review of Ecology, Evolution, and Systematics, Vol. 43, Issue 1 https://doi.org/10.1146/annurev-ecolsys-110411-160411	journal	December 2012
Core microbiomes for sustainable agroecosystems Toju, Hirokazu; Peay, Kabir G.; Yamamichi, Masato Nature Publishing Group https://doi.org/10.7892/boris.117152	text	January 2018
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant S., Lundberg, Derek; L., Dangl, Jeffery; G., Del Rio, Tijana The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/18y1-ek17	text	January 2016
Patterns and Processes of Microbial Community Assembly Nemergut, D. R.; Schmidt, S. K.; Fukami, T. Microbiology and Molecular Biology Reviews, Vol. 77, Issue 3 https://doi.org/10.1128/MMBR.00051-12	journal	September 2013
Disentangling the importance of ecological niches from stochastic processes across scales Chase, Jonathan M.; Myers, Jonathan A. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 366, Issue 1576 https://doi.org/10.1098/rstb.2011.0063	journal	August 2011
Effects of temperature and relative humidity on growth and enzyme production by Actinomucor elegans and Rhizopus oligosporus during sufu pehtze preparation Han, Bei-Zhong; Ma, Yong; Rombouts, Frans M. Food Chemistry, Vol. 81, Issue 1 https://doi.org/10.1016/S0308-8146(02)00347-3	journal	May 2003
Taking Stock of Life Thompson, Andrea Scientific American, Vol. 319, Issue 2 https://doi.org/10.1038/scientificamerican0818-16	journal	July 2018
Drought mediates the importance of stochastic community assembly Chase, J. M. Proceedings of the National Academy of Sciences, Vol. 104, Issue 44 https://doi.org/10.1073/pnas.0704350104	journal	October 2007
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem Zhou, Jizhong; Deng, Ye; Zhang, Ping Proceedings of the National Academy of Sciences, Vol. 111, Issue 9 https://doi.org/10.1073/pnas.1324044111	journal	February 2014
Predators temper the relative importance of stochastic processes in the assembly of prey metacommunities Chase, Jonathan M.; Biro, Elizabeth G.; Ryberg, Wade A. Ecology Letters, Vol. 12, Issue 11 https://doi.org/10.1111/j.1461-0248.2009.01362.x	journal	November 2009
Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments Chase, J. M. Science, Vol. 328, Issue 5984 https://doi.org/10.1126/science.1187820	journal	May 2010
Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice Edwards, Joseph A.; Santos-Medellín, Christian M.; Liechty, Zachary S. PLOS Biology, Vol. 16, Issue 2 https://doi.org/10.1371/journal.pbio.2003862	journal	February 2018
Deterministic processes vary during community assembly for ecologically dissimilar taxa Powell, Jeff R.; Karunaratne, Senani; Campbell, Colin D. Nature Communications, Vol. 6, Issue 1 https://doi.org/10.1038/ncomms9444	journal	October 2015
The biomass distribution on Earth Bar-On, Yinon M.; Phillips, Rob; Milo, Ron Proceedings of the National Academy of Sciences, Vol. 115, Issue 25 https://doi.org/10.1073/pnas.1711842115	journal	May 2018
The Estimation of Item Response Models with the `lmer` Function from the lme4 Package in R Boeck, Paul De; Bakker, Marjan; Zwitser, Robert Journal of Statistical Software, Vol. 39, Issue 12 https://doi.org/10.18637/jss.v039.i12	journal	January 2011
Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria Xu, Ling; Naylor, Dan; Dong, Zhaobin Proceedings of the National Academy of Sciences, Vol. 115, Issue 18 https://doi.org/10.1073/pnas.1717308115	journal	April 2018
Global diversity and geography of soil fungi Tedersoo, Leho; Bahram, Mohammad; Põlme, Sergei Science, Vol. 346, Issue 6213 https://doi.org/10.1126/science.1256688	journal	November 2014
Influence of extreme weather disasters on global crop production Lesk, Corey; Rowhani, Pedram; Ramankutty, Navin Nature, Vol. 529, Issue 7584 https://doi.org/10.1038/nature16467	journal	January 2016
The geographical structure of British bird distributions: diversity, spatial turnover and scale Lennon, Jack J.; Koleff, Patricia; GreenwooD, J. J. D. Journal of Animal Ecology, Vol. 70, Issue 6 https://doi.org/10.1046/j.0021-8790.2001.00563.x	journal	November 2001
Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities Maignien, L.; DeForce, E. A.; Chafee, M. E. mBio, Vol. 5, Issue 1 https://doi.org/10.1128/mbio.00682-13	journal	December 2013
Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition Almario, Juliana; Jeena, Ganga; Wunder, Jörg Proceedings of the National Academy of Sciences, Vol. 114, Issue 44 https://doi.org/10.1073/pnas.1710455114	journal	October 2017
Quantifying community assembly processes and identifying features that impose them Stegen, James C.; Lin, Xueju; Fredrickson, Jim K. The ISME Journal, Vol. 7, Issue 11 https://doi.org/10.1038/ismej.2013.93	journal	June 2013
Ecological drift and the distribution of species diversity Gilbert, Benjamin; Levine, Jonathan M. Proceedings of the Royal Society B: Biological Sciences, Vol. 284, Issue 1855 https://doi.org/10.1098/rspb.2017.0507	journal	May 2017
The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome Cregger, M. A.; Veach, A. M.; Yang, Z. K. Microbiome, Vol. 6, Issue 1 https://doi.org/10.1186/s40168-018-0413-8	journal	February 2018
Purification and characterization of a novel cellulase-free xylanase from Acrophialophora nainiana Cardoso, Orlando Aparecido Vieira; Filho, Edivaldo Ximenes Ferreira FEMS Microbiology Letters, Vol. 223, Issue 2 https://doi.org/10.1016/S0378-1097(03)00392-6	journal	June 2003
Life in Dry Soils: Effects of Drought on Soil Microbial Communities and Processes Schimel, Joshua P. Annual Review of Ecology, Evolution, and Systematics, Vol. 49, Issue 1 https://doi.org/10.1146/annurev-ecolsys-110617-062614	journal	November 2018
Microbiome Datasets Are Compositional: And This Is Not Optional Gloor, Gregory B.; Macklaim, Jean M.; Pawlowsky-Glahn, Vera Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.02224	journal	November 2017
Dimensions of biodiversity in the Earth mycobiome Peay, Kabir G.; Kennedy, Peter G.; Talbot, Jennifer M. Nature Reviews Microbiology, Vol. 14, Issue 7 https://doi.org/10.1038/nrmicro.2016.59	journal	June 2016
Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession Dini-Andreote, Francisco; Stegen, James C.; van Elsas, Jan Dirk Proceedings of the National Academy of Sciences, Vol. 112, Issue 11 https://doi.org/10.1073/pnas.1414261112	journal	March 2015
Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage Averill, Colin; Turner, Benjamin L.; Finzi, Adrien C. Nature, Vol. 505, Issue 7484 https://doi.org/10.1038/nature12901	journal	January 2014
The Phyllosphere: Microbial Jungle at the Plant–Climate Interface Vacher, Corinne; Hampe, Arndt; Porté, Annabel J. Annual Review of Ecology, Evolution, and Systematics, Vol. 47, Issue 1 https://doi.org/10.1146/annurev-ecolsys-121415-032238	journal	November 2016
Core microbiomes for sustainable agroecosystems Toju, Hirokazu; Peay, Kabir G.; Yamamichi, Masato Nature Plants, Vol. 4, Issue 5 https://doi.org/10.1038/s41477-018-0139-4	journal	April 2018
Community assembly: when should history matter? Chase, Jonathan M. Oecologia, Vol. 136, Issue 4 https://doi.org/10.1007/s00442-003-1311-7	journal	August 2003
A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America San-Juan-Vergara, Homero; Zurek, Eduardo; Ajami, Nadim J. Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-22629-7	journal	March 2018
Succession of root-associated fungi in Pisum sativum during a plant growth cycle as examined by 454 pyrosequencing Yu, L.; Nicolaisen, M.; Larsen, J. Plant and Soil, Vol. 358, Issue 1-2 https://doi.org/10.1007/s11104-012-1188-5	journal	March 2012
MycoCosm portal: gearing up for 1000 fungal genomes Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1183	journal	December 2013
Temporal dynamics of fungal communities in soybean rhizosphere Han, Li-Li; Wang, Jun-Tao; Yang, Sheng-Hui Journal of Soils and Sediments, Vol. 17, Issue 2 https://doi.org/10.1007/s11368-016-1534-y	journal	August 2016
Evolution and development of cell walls in cereal grains Burton, Rachel A.; Fincher, Geoffrey B. Frontiers in Plant Science, Vol. 5 https://doi.org/10.3389/fpls.2014.00456	journal	September 2014
Using null models to disentangle variation in community dissimilarity from variation in α-diversity Chase, Jonathan M.; Kraft, Nathan J. B.; Smith, Kevin G. Ecosphere, Vol. 2, Issue 2 https://doi.org/10.1890/ES10-00117.1	journal	February 2011
Fungal community responses to precipitation: FUNGAL CLIMATE RESPONSE Hawkes, Christine V.; Kivlin, Stephanie N.; Rocca, Jennifer D. Global Change Biology, Vol. 17, Issue 4 https://doi.org/10.1111/j.1365-2486.2010.02327.x	journal	October 2010
`betapart` : an R package for the study of beta diversity Baselga, Andrés; Orme, C. David L. Methods in Ecology and Evolution, Vol. 3, Issue 5 https://doi.org/10.1111/j.2041-210X.2012.00224.x	journal	June 2012
A new method for detecting and interpreting biodiversity and ecological community thresholds: Threshold Indicator Taxa ANalysis (TITAN) Baker, Matthew E.; King, Ryan S. Methods in Ecology and Evolution, Vol. 1, Issue 1 https://doi.org/10.1111/j.2041-210X.2009.00007.x	journal	February 2010
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant Wagner, Maggie R.; Lundberg, Derek S.; del Rio, Tijana G. Nature Communications, Vol. 7, Issue 1 https://doi.org/10.1038/ncomms12151	journal	July 2016
Tree genetics defines fungal partner communities that may confer drought tolerance Gehring, Catherine A.; Sthultz, Christopher M.; Flores-Rentería, Lluvia Proceedings of the National Academy of Sciences, Vol. 114, Issue 42 https://doi.org/10.1073/pnas.1704022114	journal	September 2017
Diversity-triggered deterministic bacterial assembly constrains community functions Xun, Weibing; Li, Wei; Xiong, Wu Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-11787-5	journal	August 2019
Influence of extreme weather disasters on global crop production Lesk, Corey; Rowhani, Pedram; Ramankutty, Navin The University of British Columbia https://doi.org/10.14288/1.0376077	text	January 2019
Erratum: Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances Adams, Rachel I.; Miletto, Marzia; Taylor, John W. The ISME Journal, Vol. 7, Issue 7 https://doi.org/10.1038/ismej.2013.84	journal	June 2013
Changes in Community Size Affect the Outcome of Competition Orrock, John L.; Fletcher Jr., Robert J. The American Naturalist, Vol. 166, Issue 1 https://doi.org/10.1086/430641	journal	July 2005
Soil pH mediates the balance between stochastic and deterministic assembly of bacteria Tripathi, Binu M.; Stegen, James C.; Kim, Mincheol The ISME Journal, Vol. 12, Issue 4 https://doi.org/10.1038/s41396-018-0082-4	journal	March 2018
Towards a unified paradigm for sequence-based identification of fungi Kõljalg, Urmas; Nilsson, R. Henrik; Abarenkov, Kessy Molecular Ecology, Vol. 22, Issue 21 https://doi.org/10.1111/mec.12481	journal	September 2013
How similar can co-occurring species be in the presence of competition and ecological drift? Capitán, José A.; Cuenda, Sara; Alonso, David Journal of The Royal Society Interface, Vol. 12, Issue 110 https://doi.org/10.1098/rsif.2015.0604	journal	September 2015
Stochastic processes shape the bacterial community assembly in shrimp cultural pond sediments Hou, Dongwei; Zhou, Renjun; Zeng, Shenzheng Applied Microbiology and Biotechnology, Vol. 105, Issue 12 https://doi.org/10.1007/s00253-021-11378-9	journal	June 2021
Community assembly and coexistence in communities of arbuscular mycorrhizal fungi Vályi, Kriszta; Mardhiah, Ulfah; Rillig, Matthias C. The ISME Journal, Vol. 10, Issue 10 https://doi.org/10.1038/ismej.2016.46	journal	April 2016
Biogeographic Patterns of Arbuscular Mycorrhizal Fungal Communities Along a Land-Use Intensification Gradient in the Subtropical Atlantic Forest Biome Ceola, Gessiane; Goss-Souza, Dennis; Alves, Joana Microbial Ecology https://doi.org/10.1007/s00248-021-01721-y	journal	March 2021
Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing Taylor, D. Lee; Walters, William A.; Lennon, Niall J. Applied and Environmental Microbiology, Vol. 82, Issue 24 https://doi.org/10.1128/aem.02576-16	journal	October 2016
APE: Analyses of Phylogenetics and Evolution in R language Paradis, E.; Claude, J.; Strimmer, K. Bioinformatics, Vol. 20, Issue 2 https://doi.org/10.1093/bioinformatics/btg412	journal	January 2004
Development of a fungus-specific PCR assay for detecting low-level fungi in an indoor environment Zhou, G.; Whong, W-Z; Ong, T. Molecular and Cellular Probes, Vol. 14, Issue 6 https://doi.org/10.1006/mcpr.2000.0324	journal	November 2000
High soil phosphorus levels overrule the potential benefits of organic farming on arbuscular mycorrhizal diversity in northern vineyards Van Geel, Maarten; Verbruggen, Erik; De Beenhouwer, Matthias Agriculture, Ecosystems & Environment, Vol. 248 https://doi.org/10.1016/j.agee.2017.07.017	journal	October 2017
Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics Bennett, Jonathan A.; Maherali, Hafiz; Reinhart, Kurt O. Science, Vol. 355, Issue 6321 https://doi.org/10.1126/science.aai8212	journal	January 2017
Sources of Fungal Genetic Variation and Associating It with Phenotypic Diversity Taylor, John W.; Branco, Sara; Gao, Cheng Microbiology Spectrum, Vol. 5, Issue 5 https://doi.org/10.1128/microbiolspec.FUNK-0057-2016	journal	September 2017

Figures / Tables (6)

Similar Records

Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression

Journal Article · Sun Jan 09 00:00:00 EST 2022 · Molecular Ecology · OSTI ID:1624233

Gao, Cheng; Courty, Pierre‐Emmanuel; Varoquaux, Nelle; +10 more

Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities

Journal Article · Tue Jul 05 00:00:00 EDT 2022 · Nature Communications · OSTI ID:1624233

Gao, Cheng; Xu, Ling; Montoya, Liliam; +11 more

Global Diversity and Biogeography of the Zostera marina Mycobiome

Journal Article · Wed May 26 00:00:00 EDT 2021 · Applied and Environmental Microbiology · OSTI ID:1624233

Ettinger, Cassandra L.; Vann, Laura E.; Eisen, Jonathan A.

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES
54 ENVIRONMENTAL SCIENCES
Science & technology - other topics
fungal ecology
microbial ecology
microbiome

Title: Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics

Citation Formats

References (96)

Figures / Tables (6)

Similar Records

Related Subjects