Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection

Kolody, B. C.; McCrow, J. P.; Allen, L. Zeigler; Aylward, F. O.; Fontanez, K. M.; Moustafa, A.; Moniruzzaman, M.; Chavez, F. P.; Scholin, C. A.; Allen, E. E.; Worden, A. Z.; Delong, E. F.; Allen, A. E.

doi:10.1038/s41396-019-0472-2

Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection

Journal Article · Thu Jul 18 00:00:00 EDT 2019 · The ISME Journal

DOI:https://doi.org/10.1038/s41396-019-0472-2· OSTI ID:1624026

Kolody, B. C. ^[1]; McCrow, J. P. ^[2]; Allen, L. Zeigler ^[3]; Aylward, F. O. ^[4]; Fontanez, K. M. ^[5]; ^[6]; Moniruzzaman, M. ^[7]; Chavez, F. P. ^[8]; Scholin, C. A. ^[8]; ^[9]; ^[10]; Delong, E. F. ^[11]; ^[3]

University of California, San Diego, CA (United States). Scripps Institution of Oceanography; J. Craig Venter Institute, La Jolla, CA (United States). Microbial and Environmental Genomics Group; DOE/OSTI
J. Craig Venter Institute, La Jolla, CA (United States). Microbial and Environmental Genomics Group
University of California, San Diego, CA (United States). Scripps Institution of Oceanography; J. Craig Venter Institute, La Jolla, CA (United States). Microbial and Environmental Genomics Group
Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States). Dept. of Biological Sciences
Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States). Dept. of Civil and Environmental Engineering
American University in Cairo, New Cairo (Egypt). Dept. of Biology and Biotechnology Graduate Program
Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States). Dept. of Biological Sciences; Monterey Bay Aquarium Research Institute, Moss Landing, CA (United States)
Monterey Bay Aquarium Research Institute, Moss Landing, CA (United States)
University of California, San Diego, CA (United States). Scripps Institution of Oceanography
GEOMAR Helmholtz Centre for Ocean Research, Kiel (Germany). Ocean EcoSystems Biology Unit
Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States). Dept. of Civil and Environmental Engineering; University of Hawaii, Honolulu, HI (United States). Daniel K. Inouye Center for Microbial Oceanography: Research and Education (C-MORE)

Phytoplankton and associated microbial communities provide organic carbon to oceanic food webs and drive ecosystem dynamics. However, capturing those dynamics is challenging. Here, an in situ, semi-Lagrangian, robotic sampler profiled pelagic microbes at 4 h intervals over ~2.6 days in North Pacific high-nutrient, low-chlorophyll waters. We report on the community structure and transcriptional dynamics of microbes in an operationally large size class (>5 μm) predominantly populated by dinoflagellates, ciliates, haptophytes, pelagophytes, diatoms, cyanobacteria (chiefly Synechococcus), prasinophytes (chiefly Ostreococcus), fungi, archaea, and proteobacteria. Apart from fungi and archaea, all groups exhibited 24-h periodicity in some transcripts, but larger portions of the transcriptome oscillated in phototrophs. Periodic photosynthesis-related transcripts exhibited a temporal cascade across the morning hours, conserved across diverse phototrophic lineages. Pronounced silica:nitrate drawdown, a high flavodoxin to ferredoxin transcript ratio, and elevated expression of other Fe-stress markers indicated Fe-limitation. Fe-stress markers peaked during a photoperiodically adaptive time window that could modulate phytoplankton response to seasonal Fe-limitation. Remarkably, we observed viruses that infect the majority of abundant taxa, often with total transcriptional activity synchronized with putative hosts. Taken together, these data reveal a microbial plankton community that is shaped by recycled production and tightly controlled by Fe-limitation and viral activity

View Accepted Manuscript (DOE)

Research Organization:: J. Craig Venter Inst., Inc., Rockville, MD (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: SC0008593; SC0018344

OSTI ID:: 1624026

Journal Information:: The ISME Journal, Journal Name: The ISME Journal Journal Issue: 11 Vol. 13; ISSN 1751-7362

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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A Hard Day'S Night: Diel Shifts In Microbial Eukaryotic Activity In The North Pacific Subtropical Gyre Hu, Sarah K. Zenodo https://doi.org/10.5281/zenodo.1243294	dataset	January 2018
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Transcriptional patterns of Emiliania huxleyi in the North Pacific Subtropical Gyre reveal the daily rhythms of its metabolic potential Hernández Limón, María D.; Hennon, Gwenn M. M.; Harke, Matthew J. Environmental Microbiology, Vol. 22, Issue 1 https://doi.org/10.1111/1462-2920.14855	journal	November 2019
Resource conservation manifests in the genetic code Shenhav, Liat; Zeevi, David Science, Vol. 370, Issue 6517 https://doi.org/10.1126/science.aaz9642	journal	November 2020
Resource conservation manifests in the genetic code Shenhav, Liat; Zeevi, David Zenodo https://doi.org/10.5281/zenodo.4001182	text	January 2020
Resource conservation manifests in the genetic code Shenhav, Liat; Zeevi, David Zenodo https://doi.org/10.5281/zenodo.4001183	text	January 2020

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