Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions

Oghenekaro, Abbot O.; Kovalchuk, Andriy; Raffaello, Tommaso; Camarero, Susana; Gressler, Markus; Henrissat, Bernard; Lee, Juna; Liu, Mengxia; Martínez, Angel T.; Miettinen, Otto; Mihaltcheva, Sirma; Pangilinan, Jasmyn; Ren, Fei; Riley, Robert; Ruiz-Dueñas, Francisco Javier; Serrano, Ana; Thon, Michael R.; Wen, Zilan; Zeng, Zhen; Barry, Kerrie; Grigoriev, Igor V.; Martin, Francis; Asiegbu, Fred O.

doi:10.1038/s41598-020-62150-4

Title: Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions

Journal Article · Mon Mar 23 00:00:00 EDT 2020 · Scientific Reports

DOI:https://doi.org/10.1038/s41598-020-62150-4· OSTI ID:1619169

^[1]; Kovalchuk, Andriy ^[2]; Raffaello, Tommaso ^[2]; Camarero, Susana ^[3]; Gressler, Markus ^[4];

^[5]; Lee, Juna ^[6]; Liu, Mengxia ^[2]; Martínez, Angel T. ^[3]; Miettinen, Otto ^[7]; Mihaltcheva, Sirma ^[6]; Pangilinan, Jasmyn ^[6]; Ren, Fei ^[2]; Riley, Robert ^[6];

^[3]; Serrano, Ana ^[3];

^[8]; Wen, Zilan ^[2]; Zeng, Zhen ^[2]; Barry, Kerrie ^[6] more »

Univ. of Manitoba, Winnipeg, MB (Canada); Univ. of Benin, Benin City (Nigeria); Univ. of Helsinki (Finalnd)
Univ. of Helsinki (Finalnd)
Consejo Superior de Invesitgaciones Cientificas, Madrid (Spain)
Friedrich Sciller Univ., Jena (Germany)
Aix-Marseille Univ., Marseille (France); Inst. National de la Recherche Agronomique, Marseille (France); King Abdulaziz Univ., Jeddah (Saudi Arabia)
USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)
Univ. of California, Berkeley, CA (United States)
Chinese Academy of Forestry, Beijing (China)
USDOE Joint Genome Institute (JGI), Berkeley, CA (United States); Univ. de Salamanca, Villamayor (Spain)
Inst. National de la Recherche Agronomique (INRA), Champenoux (France); Univ. of Lorraine, Champenoux (France)

Fungal plant pathogens remain a serious threat to the sustainable agriculture and forestry, despite the extensive efforts undertaken to control their spread. White root rot disease is threatening rubber tree (Hevea brasiliensis) plantations throughout South and Southeast Asia and Western Africa, causing tree mortality and severe yield losses. Here, we report the complete genome sequence of the basidiomycete fungus Rigidoporus microporus, a causative agent of the disease. Our phylogenetic analysis confirmed the position of R. microporus among the members of Hymenochaetales, an understudied group of basidiomycetes. Our analysis further identified pathogen's genes with a predicted role in the decay of plant cell wall polymers, in the utilization of latex components and in interspecific interactions between the pathogen and other fungi. We also detected putative horizontal gene transfer events in the genome of R. microporus. The reported first genome sequence of a tropical rubber tree pathogen R. microporus should contribute to the better understanding of how the fungus is able to facilitate wood decay and nutrient cycling as well as tolerate latex and utilize resinous extractives.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC); Academy of Finland

Grant/Contract Number:: AC02-05CH11231; 307580

OSTI ID:: 1619169

Journal Information:: Scientific Reports, Vol. 10, Issue 1; ISSN 2045-2322

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

References (81)

A Fungal Family of Transcriptional Regulators: the Zinc Cluster Proteins MacPherson, S.; Larochelle, M.; Turcotte, B. Microbiology and Molecular Biology Reviews, Vol. 70, Issue 3 https://doi.org/10.1128/MMBR.00015-06	journal	September 2006
Plant Cell Wall–Degrading Enzymes and Their Secretion in Plant-Pathogenic Fungi Kubicek, Christian P.; Starr, Trevor L.; Glass, N. Louise Annual Review of Phytopathology, Vol. 52, Issue 1 https://doi.org/10.1146/annurev-phyto-102313-045831	journal	August 2014
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data Kearse, M.; Moir, R.; Wilson, A. Bioinformatics, Vol. 28, Issue 12 https://doi.org/10.1093/bioinformatics/bts199	journal	April 2012
Sidera, a new genus in Hymenochaetales with poroid and hydnoid species Miettinen, Otto; Larsson, Karl-Henrik Mycological Progress, Vol. 10, Issue 2 https://doi.org/10.1007/s11557-010-0682-5	journal	June 2010
Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans Bergmann, Sebastian; Schümann, Julia; Scherlach, Kirstin Nature Chemical Biology, Vol. 3, Issue 4 https://doi.org/10.1038/nchembio869	journal	March 2007
Interspecific combative interactions between wood-decaying basidiomycetes Boddy, Lynne FEMS Microbiology Ecology, Vol. 31, Issue 3 https://doi.org/10.1111/j.1574-6941.2000.tb00683.x	journal	March 2000
Three Redundant Synthetases Secure Redox-Active Pigment Production in the Basidiomycete Paxillus involutus Braesel, Jana; Götze, Sebastian; Shah, Firoz Chemistry & Biology, Vol. 22, Issue 10 https://doi.org/10.1016/j.chembiol.2015.08.016	journal	October 2015
STAR: ultrafast universal RNA-seq aligner Dobin, Alexander; Davis, Carrie A.; Schlesinger, Felix Bioinformatics, Vol. 29, Issue 1 https://doi.org/10.1093/bioinformatics/bts635	journal	October 2012
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0 Guindon, Stéphane; Dufayard, Jean-François; Lefort, Vincent Systematic Biology, Vol. 59, Issue 3 https://doi.org/10.1093/sysbio/syq010	journal	March 2010
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis Castresana, J. Molecular Biology and Evolution, Vol. 17, Issue 4 https://doi.org/10.1093/oxfordjournals.molbev.a026334	journal	April 2000
Further analysts of the data by akaike' s information criterion and the finite corrections: Further analysts of the data by akaike' s Sugiura, Nariaki Communications in Statistics - Theory and Methods, Vol. 7, Issue 1 https://doi.org/10.1080/03610927808827599	journal	January 1978
The importance of inoculum size for the competitive ability of wood decomposing fungi Holmer, Lillian; Stenlid, Jan FEMS Microbiology Ecology, Vol. 12, Issue 3 https://doi.org/10.1111/j.1574-6941.1993.tb00029.x	journal	July 1993
The siderophore system is essential for viability of Aspergillus nidulans: functional analysis of two genes encoding l-ornithine N 5-monooxygenase (sidA) and a non-ribosomal peptide synthetase (sidC): The siderophore sysem of Aspergillus Eisendle, Martin; Oberegger, Harald; Zadra, Ivo Molecular Microbiology, Vol. 49, Issue 2 https://doi.org/10.1046/j.1365-2958.2003.03586.x	journal	June 2003
Horizontal gene transfer in eukaryotic evolution Keeling, Patrick J.; Palmer, Jeffrey D. Nature Reviews Genetics, Vol. 9, Issue 8 https://doi.org/10.1038/nrg2386	journal	August 2008
Fungal Effectors and Plant Susceptibility Lo Presti, Libera; Lanver, Daniel; Schweizer, Gabriel Annual Review of Plant Biology, Vol. 66, Issue 1 https://doi.org/10.1146/annurev-arplant-043014-114623	journal	April 2015
Locating proteins in the cell using TargetP, SignalP and related tools Emanuelsson, Olof; Brunak, Søren; von Heijne, Gunnar Nature Protocols, Vol. 2, Issue 4 https://doi.org/10.1038/nprot.2007.131	journal	April 2007
Molecular phylogeny of Rigidoporus microporus isolates associated with white rot disease of rubber trees (Hevea brasiliensis) Oghenekaro, Abbot O.; Miettinen, Otto; Omorusi, Victor I. Fungal Biology, Vol. 118, Issue 5-6 https://doi.org/10.1016/j.funbio.2014.04.001	journal	May 2014
Differential expression analysis for sequence count data Anders, Simon; Huber, Wolfgang Genome Biology, Vol. 11, Issue 10 https://doi.org/10.1186/gb-2010-11-10-r106	journal	October 2010
Comparative and population genomic landscape of Phellinus noxius : A hypervariable fungus causing root rot in trees Chung, Chia-Lin; Lee, Tracy J.; Akiba, Mitsuteru Molecular Ecology, Vol. 26, Issue 22 https://doi.org/10.1111/mec.14359	journal	October 2017
Root Rot Diseases of Rubber Trees. Nandris, D. Plant Disease, Vol. 71, Issue 4 https://doi.org/10.1094/PD-71-0298	journal	January 1987
SignalP 4.0: discriminating signal peptides from transmembrane regions Petersen, Thomas Nordahl; Brunak, Søren; von Heijne, Gunnar Nature Methods, Vol. 8, Issue 10 https://doi.org/10.1038/nmeth.1701	journal	September 2011
Hymenochaetales: a molecular phylogeny for the hymenochaetoid clade Larsson, Karl-Henrik; Parmasto, Erast; Fischer, Michael Mycologia, Vol. 98, Issue 6 https://doi.org/10.1080/15572536.2006.11832622	journal	November 2006
The saprotrophic wood-degrading abilities of Rigidoporus microporus Oghenekaro, Abbot; Daniel, Geoffrey; Asiegbu, Fred Silva Fennica, Vol. 49, Issue 4 https://doi.org/10.14214/sf.1320	journal	January 2015
Draft genome sequence of the rubber tree Hevea brasiliensis Rahman, Ahmad Yamin Abdul; Usharraj, Abhilash O.; Misra, Biswapriya B. BMC Genomics, Vol. 14, Issue 1 https://doi.org/10.1186/1471-2164-14-75	journal	January 2013
The separate roles of plant cis and trans prenyl transferases in cis-1,4-polyisoprene biosynthesis Cornish, Katrina European Journal of Biochemistry, Vol. 218, Issue 1 https://doi.org/10.1111/j.1432-1033.1993.tb18374.x	journal	November 1993
Identification and Characterization of Genes from Streptomyces sp. Strain K30 Responsible for Clear Zone Formation on Natural Rubber Latex and Poly( cis -1,4-isoprene) Rubber Degradation Rose, Karsten; Tenberge, Klaus B.; Steinbüchel, Alexander Biomacromolecules, Vol. 6, Issue 1 https://doi.org/10.1021/bm0496110	journal	January 2005
Small secreted proteins from the necrotrophic conifer pathogen Heterobasidion annosum s.l. (HaSSPs) induce cell death in Nicotiana benthamiana Raffaello, Tommaso; Asiegbu, Fred O. Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-08010-0	journal	August 2017
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments Price, Morgan N.; Dehal, Paramvir S.; Arkin, Adam P. PLoS ONE, Vol. 5, Issue 3 https://doi.org/10.1371/journal.pone.0009490	journal	March 2010
Identification of horizontally transferred genes in the genus Colletotrichum reveals a steady tempo of bacterial to fungal gene transfer Jaramillo, Vinicio D. Armijos; Sukno, Serenella A.; Thon, Michael R. BMC Genomics, Vol. 16, Issue 1 https://doi.org/10.1186/1471-2164-16-2	journal	January 2015
Fungal Transporters Involved in Efflux of Natural Toxic Compounds and Fungicides Del Sorbo, Giovanni; Schoonbeek, Henk-jan; De Waard, Maarten A. Fungal Genetics and Biology, Vol. 30, Issue 1 https://doi.org/10.1006/fgbi.2000.1206	journal	June 2000
The Biodegradation of Latex Rubber: A Minireview Chengalroyen, M. D.; Dabbs, E. R. Journal of Polymers and the Environment, Vol. 21, Issue 3 https://doi.org/10.1007/s10924-013-0593-z	journal	June 2013
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability Katoh, K.; Standley, D. M. Molecular Biology and Evolution, Vol. 30, Issue 4 https://doi.org/10.1093/molbev/mst010	journal	January 2013
Host-specific toxins: effectors of necrotrophic pathogenicity Friesen, Timothy L.; Faris, Justin D.; Solomon, Peter S. Cellular Microbiology, Vol. 10, Issue 7 https://doi.org/10.1111/j.1462-5822.2008.01153.x	journal	July 2008
Concluding remarks: Methods for studying microbial interactions Dowding, P. Annals of Applied Biology, Vol. 89, Issue 1 https://doi.org/10.1111/j.1744-7348.1978.tb02601.x	journal	May 1978
Selectivity of Fungal Sesquiterpene Synthases: Role of the Active Site's H-1α Loop in Catalysis LÃ¯Â¿Â½pez-Gallego, Fernando; Wawrzyn, GraysonT.; Schmidt-Dannert, Claudia Applied and Environmental Microbiology, Vol. 76, Issue 23 https://doi.org/10.1128/AEM.01811-10	journal	October 2010
Linear fusigen as the major hydroxamate siderophore of the ectomycorrhizal Basidiomycota Laccaria laccata and Laccaria bicolor Haselwandter, Kurt; Häninger, Gerlinde; Ganzera, Markus BioMetals, Vol. 26, Issue 6 https://doi.org/10.1007/s10534-013-9673-8	journal	September 2013
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes Floudas, Dimitrios; Binder, Manfred; Riley, Robert Science, Vol. 336, Issue 6089 https://doi.org/10.1126/science.1221748	journal	June 2012
Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation Min, Byoungnam; Park, Hongjae; Jang, Yeongseon Journal of Biotechnology, Vol. 211 https://doi.org/10.1016/j.jbiotec.2015.06.426	journal	October 2015
A survey of genes encoding H2O2-producing GMC oxidoreductases in 10 Polyporales genomes Ferreira, P.; Carro, J.; Serrano, A. Mycologia, Vol. 107, Issue 6 https://doi.org/10.3852/15-027	journal	August 2015
Management of basidiomycete root- and stem-rot diseases in oil palm, rubber and tropical hardwood plantation crops Mohammed, C. L.; Rimbawanto, A.; Page, D. E. Forest Pathology, Vol. 44, Issue 6 https://doi.org/10.1111/efp.12140	journal	December 2014
HTSeq--a Python framework to work with high-throughput sequencing data Anders, S.; Pyl, P. T.; Huber, W. Bioinformatics, Vol. 31, Issue 2 https://doi.org/10.1093/bioinformatics/btu638	journal	September 2014
Identification and analysis of differentially expressed cDNAs during nonself-competitive interaction between Phlebiopsis gigantea and Heterobasidion parviporum: Interspecific interaction between H. parviporum and P. gigantea Adomas, Aleksandra; Eklund, Martin; Johansson, Martin FEMS Microbiology Ecology, Vol. 57, Issue 1 https://doi.org/10.1111/j.1574-6941.2006.00094.x	journal	July 2006
A role for small secreted proteins (SSPs) in a saprophytic fungal lifestyle: Ligninolytic enzyme regulation in Pleurotus ostreatus Feldman, Daria; Kowbel, David J.; Glass, N. Louise Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-15112-2	journal	November 2017
SMS: Smart Model Selection in PhyML Lefort, Vincent; Longueville, Jean-Emmanuel; Gascuel, Olivier Molecular Biology and Evolution, Vol. 34, Issue 9 https://doi.org/10.1093/molbev/msx149	journal	May 2017
Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen Krogh, Anders; Larsson, Björn; von Heijne, Gunnar Journal of Molecular Biology, Vol. 305, Issue 3 https://doi.org/10.1006/jmbi.2000.4315	journal	January 2001
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets Kumar, Sudhir; Stecher, Glen; Tamura, Koichiro Molecular Biology and Evolution, Vol. 33, Issue 7 https://doi.org/10.1093/molbev/msw054	journal	March 2016
FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads Lam, Ka-Kit; LaButti, Kurt; Khalak, Asif Bioinformatics, Vol. 31, Issue 19 https://doi.org/10.1093/bioinformatics/btv280	journal	June 2015
Transformation of the mycorrhizal fungus Laccaria bicolor using Agrobacterium tumefaciens Kemppainen, Minna J.; Pardo, Alejandro G. Bioengineered Bugs, Vol. 2, Issue 1 https://doi.org/10.4161/bbug.2.1.14394	journal	January 2011
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs Zdobnov, Evgeny M.; Tegenfeldt, Fredrik; Kuznetsov, Dmitry Nucleic Acids Research, Vol. 45, Issue D1 https://doi.org/10.1093/nar/gkw1119	journal	November 2016
De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood Oghenekaro, Abbot O.; Raffaello, Tommaso; Kovalchuk, Andriy BMC Genomics, Vol. 17, Issue 1 https://doi.org/10.1186/s12864-016-2574-9	journal	March 2016
PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database Urban, Martin; Cuzick, Alayne; Rutherford, Kim Nucleic Acids Research, Vol. 45, Issue D1 https://doi.org/10.1093/nar/gkw1089	journal	December 2016
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information Biasini, Marco; Bienert, Stefan; Waterhouse, Andrew Nucleic Acids Research, Vol. 42, Issue W1 https://doi.org/10.1093/nar/gku340	journal	April 2014
Fungal metabolic gene clustersâ€”caravans traveling across genomes and environments Wisecaver, Jennifer H.; Rokas, Antonis Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.00161	journal	March 2015
Horizontal gene transfer in fungi Fitzpatrick, David A. FEMS Microbiology Letters, Vol. 329, Issue 1 https://doi.org/10.1111/j.1574-6968.2011.02465.x	journal	December 2011
An efficient algorithm for large-scale detection of protein families Enright, A. J. Nucleic Acids Research, Vol. 30, Issue 7 https://doi.org/10.1093/nar/30.7.1575	journal	April 2002
Fungal communities in decaying hardwood branches Carruthers, S. M.; Rayner, A. D. M. Transactions of the British Mycological Society, Vol. 72, Issue 2 https://doi.org/10.1016/S0007-1536(79)80044-3	journal	April 1979
Fungal Genomics Kuo, Alan; Bushnell, Brian; Grigoriev, Igor V. Fungi, Vol. 70, p. 1-52 https://doi.org/10.1016/B978-0-12-397940-7.00001-X	book	May 2014
Evaluation of potential reference genes for use in gene expression studies in the conifer pathogen (Heterobasidion annosum) Raffaello, Tommaso; Asiegbu, Fred O. Molecular Biology Reports, Vol. 40, Issue 7 https://doi.org/10.1007/s11033-013-2553-z	journal	May 2013
Root-rot diseases of the rubber tree in the Ivory Coast. 1. Severity, dynamics, and characterization of epidemics Nandris, Daniel; Nicole, Michel; Geiger, Jean Paul Canadian Journal of Forest Research, Vol. 18, Issue 10 https://doi.org/10.1139/x88-192	journal	October 1988
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates Nordberg, Henrik; Cantor, Michael; Dusheyko, Serge Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1069	journal	November 2013
Activity of α-Aminoadipate Reductase Depends on the N-Terminally Extending Domain Kalb, Daniel; Lackner, Gerald; Rappe, Marcus ChemBioChem, Vol. 16, Issue 10 https://doi.org/10.1002/cbic.201500190	journal	June 2015
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities Nagy, László G.; Riley, Robert; Tritt, Andrew Molecular Biology and Evolution, Vol. 33, Issue 4 https://doi.org/10.1093/molbev/msv337	journal	December 2015
Nonribosomal peptide synthesis in Aspergillus fumigatus and other fungi Stack, Deirdre.; Neville, Claire.; Doyle, Sean. Microbiology, Vol. 153, Issue 5 https://doi.org/10.1099/mic.0.2006/006908-0	journal	May 2007
MycoCosm portal: gearing up for 1000 fungal genomes Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1183	journal	December 2013
Isolation of good quality RNA from a medicinal plant seabuckthorn, rich in secondary metabolites Ghangal, Rajesh; Raghuvanshi, Saurabh; Chand Sharma, Prakash Plant Physiology and Biochemistry, Vol. 47, Issue 11-12 https://doi.org/10.1016/j.plaphy.2009.09.004	journal	November 2009
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi Riley, Robert; Salamov, Asaf A.; Brown, Daren W. Proceedings of the National Academy of Sciences, Vol. 111, Issue 27 https://doi.org/10.1073/pnas.1400592111	journal	June 2014
Horizontal Gene Transfer in Eukaryotic Plant Pathogens Soanes, Darren; Richards, Thomas A. Annual Review of Phytopathology, Vol. 52, Issue 1 https://doi.org/10.1146/annurev-phyto-102313-050127	journal	August 2014
Distinct Roles for Intra- and Extracellular Siderophores during Aspergillus fumigatus Infection Schrettl, Markus; Bignell, Elaine; Kragl, Claudia PLoS Pathogens, Vol. 3, Issue 9 https://doi.org/10.1371/journal.ppat.0030128	journal	September 2007
Selection of optimal reference genes for gene expression studies in chronically hypoxic rat heart Benak, Daniel; Sotakova-Kasparova, Dita; Neckar, Jan Molecular and Cellular Biochemistry, Vol. 461, Issue 1-2 https://doi.org/10.1007/s11010-019-03584-x	journal	July 2019
Effect of water activity, temperature and substrate on interactions between field and storage fungi Magan, N.; Lacey, J. Transactions of the British Mycological Society, Vol. 82, Issue 1 https://doi.org/10.1016/s0007-1536(84)80214-4	journal	February 1984
Selective replacement between species of wood-rotting basidiomycetes, a laboratory study Holmer, L.; Renvall, P.; Stenlid, J. Mycological Research, Vol. 101, Issue 6 https://doi.org/10.1017/s0953756296003243	journal	June 1997
Shared and distinct transcriptomic cell types across neocortical areas Tasic, Bosiljka; Yao, Zizhen; Graybuck, Lucas T. Nature, Vol. 563, Issue 7729 https://doi.org/10.1038/s41586-018-0654-5	journal	October 2018
Characterization and phylogenetic analysis of the complete mitochondrial genome of the pathogenic fungus Ilyonectria destructans Androsiuk, Piotr; Okorski, Adam; Paukszto, Łukasz Scientific Reports, Vol. 12, Issue 1 https://doi.org/10.1038/s41598-022-05428-z	journal	February 2022
Full-length transcriptome analysis of multiple organs and identification of adaptive genes and pathways in Mikania micrantha Ruan, Xiaoxian; Wang, Zhen; Su, Yingjuan Scientific Reports, Vol. 12, Issue 1 https://doi.org/10.1038/s41598-022-07198-0	journal	February 2022
Salinity tolerance mechanisms of an Arctic Pelagophyte using comparative transcriptomic and gene expression analysis Freyria, Nastasia J.; Kuo, Alan; Chovatia, Mansi Communications Biology, Vol. 5, Issue 1 https://doi.org/10.1038/s42003-022-03461-2	journal	May 2022
Phylogeny and diversity of the morphologically similar polypore genera Rigidoporus, Physisporinus, Oxyporus, and Leucophellinus Wu, Fang; Chen, Jia-Jia; Ji, Xiao-Hong Mycologia https://doi.org/10.1080/00275514.2017.1405215	journal	November 2017
A Highly Conserved Basidiomycete Peptide Synthetase Produces a Trimeric Hydroxamate Siderophore Brandenburger, Eileen; Gressler, Markus; Leonhardt, Robin Applied and Environmental Microbiology, Vol. 83, Issue 21 https://doi.org/10.1128/aem.01478-17	journal	August 2017
Differential Gene Expression in Pycnoporus coccineus during Interspecific Mycelial Interactions with Different Competitors Arfi, Yonathan; Levasseur, Anthony; Record, Eric Applied and Environmental Microbiology, Vol. 79, Issue 21 https://doi.org/10.1128/aem.02316-13	journal	August 2013
Heme-Dependent Rubber Oxygenase RoxA of Xanthomonas sp. Cleaves the Carbon Backbone of Poly(cis-1,4-Isoprene) by a Dioxygenase Mechanism Braaz, Reinhard; Armbruster, Wolfgang; Jendrossek, Dieter Applied and Environmental Microbiology, Vol. 71, Issue 5 https://doi.org/10.1128/aem.71.5.2473-2478.2005	journal	May 2005
Exometabolite Dynamics over Stationary Phase Reveal Strain-Specific Responses Chodkowski, John L.; Shade, Ashley mSystems, Vol. 5, Issue 6 https://doi.org/10.1128/msystems.00493-20	journal	December 2020
The α-Aminoadipate Pathway for Lysine Biosynthesis in Fungi Xu, Hengyu; Andi, Babak; Qian, Jinghua Cell Biochemistry and Biophysics, Vol. 46, Issue 1 https://doi.org/10.1385/cbb:46:1:43	journal	January 2006

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